Results 41 - 60 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19071 | 5' | -54.9 | NC_004684.1 | + | 19469 | 0.66 | 0.771474 |
Target: 5'- -gUGGCC--CGCGCGACAugcgccccuggagcCAGCCGCu -3' miRNA: 3'- agGCCGGuuGCGCGUUGU--------------GUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 59347 | 0.66 | 0.76846 |
Target: 5'- cCCGGCCGuugguguugaacACGCGCAcgguguccuggaaccGCcCGGCgGCAc -3' miRNA: 3'- aGGCCGGU------------UGCGCGU---------------UGuGUUGgUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 54477 | 0.66 | 0.764423 |
Target: 5'- gUUGGCCGACgGCGCAcCGgcACCGCu -3' miRNA: 3'- aGGCCGGUUG-CGCGUuGUguUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 62932 | 0.66 | 0.764423 |
Target: 5'- -aCGGCCucGCGCGCAcguGCGGCCucCAg -3' miRNA: 3'- agGCCGGu-UGCGCGUug-UGUUGGu-GU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 52458 | 0.66 | 0.764423 |
Target: 5'- aCCGGgaugcCCGACG-GCAugGCcGCCACc -3' miRNA: 3'- aGGCC-----GGUUGCgCGUugUGuUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 56768 | 0.66 | 0.764423 |
Target: 5'- cUCGGCCAGCaCGCccauACgGCAACgGCAg -3' miRNA: 3'- aGGCCGGUUGcGCGu---UG-UGUUGgUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 5608 | 0.66 | 0.764423 |
Target: 5'- gCCGaGCUGGCGCGCAugguGCugGAgCugGa -3' miRNA: 3'- aGGC-CGGUUGCGCGU----UGugUUgGugU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 29224 | 0.66 | 0.764423 |
Target: 5'- -aCGGCCAggacAUGCuGUGGCGCGGCCcCAu -3' miRNA: 3'- agGCCGGU----UGCG-CGUUGUGUUGGuGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 52976 | 0.66 | 0.764423 |
Target: 5'- cUUGGCCAGCaguucGCGCAGCAUcuCCuGCGg -3' miRNA: 3'- aGGCCGGUUG-----CGCGUUGUGuuGG-UGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 48298 | 0.66 | 0.764423 |
Target: 5'- aCCGGCCuuCGCGCAccaGCAgu-UCGCu -3' miRNA: 3'- aGGCCGGuuGCGCGU---UGUguuGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 4235 | 0.66 | 0.764423 |
Target: 5'- gCCuGCgCGGCGCGCAggagccGCACucgGCCACc -3' miRNA: 3'- aGGcCG-GUUGCGCGU------UGUGu--UGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 56926 | 0.66 | 0.764423 |
Target: 5'- cUCCuGCCuggAGCGCGCccggGACugGugCACGg -3' miRNA: 3'- -AGGcCGG---UUGCGCG----UUGugUugGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 53716 | 0.66 | 0.760364 |
Target: 5'- aCCGGCCAccauguccuggacCGUGCGcCACGagacACCACGc -3' miRNA: 3'- aGGCCGGUu------------GCGCGUuGUGU----UGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 877 | 0.66 | 0.758327 |
Target: 5'- -aCGGCCAGCacgugauccccGCGCcGCGCAacauccuggucagcuACCACu -3' miRNA: 3'- agGCCGGUUG-----------CGCGuUGUGU---------------UGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 54287 | 0.66 | 0.754237 |
Target: 5'- gCUGGCCGguggggcgGCGUGCAccGCGCgAACCGgGg -3' miRNA: 3'- aGGCCGGU--------UGCGCGU--UGUG-UUGGUgU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 48790 | 0.66 | 0.754237 |
Target: 5'- gCgGGCCGAUGaUGCAGgACAgGCCGCc -3' miRNA: 3'- aGgCCGGUUGC-GCGUUgUGU-UGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 7328 | 0.66 | 0.754237 |
Target: 5'- aCgGGCCGcCGgGCcGCGC-GCCACGa -3' miRNA: 3'- aGgCCGGUuGCgCGuUGUGuUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 11528 | 0.66 | 0.754237 |
Target: 5'- cCCGGCCAccuuggcgucgACGuCGCAcugcACGCAGuacCCGCu -3' miRNA: 3'- aGGCCGGU-----------UGC-GCGU----UGUGUU---GGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 42055 | 0.66 | 0.754237 |
Target: 5'- -aUGGCCGACGgGCAGaaaGACCAg- -3' miRNA: 3'- agGCCGGUUGCgCGUUgugUUGGUgu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 51653 | 0.66 | 0.754237 |
Target: 5'- -gCGGCCAGuCGCuggGCAACuc-GCCACGa -3' miRNA: 3'- agGCCGGUU-GCG---CGUUGuguUGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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