miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19075 3' -57.4 NC_004684.1 + 6941 0.68 0.482711
Target:  5'- cGUGUCCGGCG-UGAagaaGUUCGCCAc -3'
miRNA:   3'- -UACAGGCCGCuGCUgcc-UAAGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 63344 0.67 0.576066
Target:  5'- ---cCCGGCGAUGGcCGGuaggccaccgUCGCCAUg -3'
miRNA:   3'- uacaGGCCGCUGCU-GCCua--------AGCGGUA- -5'
19075 3' -57.4 NC_004684.1 + 5989 0.67 0.597476
Target:  5'- cAUGUaCGGCGG-GACGGAccCGCCAc -3'
miRNA:   3'- -UACAgGCCGCUgCUGCCUaaGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 51700 0.67 0.597476
Target:  5'- gAUG-CCGGUGGCGuCGGugcCGCCGc -3'
miRNA:   3'- -UACaGGCCGCUGCuGCCuaaGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 35659 0.66 0.640565
Target:  5'- -aGggCCGuCGGCGGCGGugugUCGCCAc -3'
miRNA:   3'- uaCa-GGCcGCUGCUGCCua--AGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 23987 0.66 0.662102
Target:  5'- -gGUUCGGCGGCGGCGacccGUUCuccggGCCGUc -3'
miRNA:   3'- uaCAGGCCGCUGCUGCc---UAAG-----CGGUA- -5'
19075 3' -57.4 NC_004684.1 + 26595 0.66 0.662102
Target:  5'- uUGUaCGGCGG-GACGGAccCGCCAc -3'
miRNA:   3'- uACAgGCCGCUgCUGCCUaaGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 39438 0.67 0.576066
Target:  5'- cUGUUCGGCGACGuaccACGG---UGCCAg -3'
miRNA:   3'- uACAGGCCGCUGC----UGCCuaaGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 23213 0.68 0.533835
Target:  5'- gGUG-CUGGCGcGCGcCGGGUucaUCGCCGUg -3'
miRNA:   3'- -UACaGGCCGC-UGCuGCCUA---AGCGGUA- -5'
19075 3' -57.4 NC_004684.1 + 2212 0.68 0.533835
Target:  5'- cGUGUaCGGCGG-GACGGAccCGCCAg -3'
miRNA:   3'- -UACAgGCCGCUgCUGCCUaaGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 46634 0.68 0.502897
Target:  5'- --cUCCGGUGugGACGGcacCGCCu- -3'
miRNA:   3'- uacAGGCCGCugCUGCCuaaGCGGua -5'
19075 3' -57.4 NC_004684.1 + 43078 0.69 0.472765
Target:  5'- --cUCCGGCGACGggucuuugauACGGAccUCGCCu- -3'
miRNA:   3'- uacAGGCCGCUGC----------UGCCUa-AGCGGua -5'
19075 3' -57.4 NC_004684.1 + 10761 0.69 0.472765
Target:  5'- --cUUCGGCGuCGACGGGUugcugucgggguUCGCCGg -3'
miRNA:   3'- uacAGGCCGCuGCUGCCUA------------AGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 38485 0.7 0.424682
Target:  5'- -cGUCCGGuCGaucaGCGGCGG--UCGCCAc -3'
miRNA:   3'- uaCAGGCC-GC----UGCUGCCuaAGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 24772 0.73 0.258208
Target:  5'- ---aCCGGCGGCGGCGGGggaggUGCCGg -3'
miRNA:   3'- uacaGGCCGCUGCUGCCUaa---GCGGUa -5'
19075 3' -57.4 NC_004684.1 + 17503 1.03 0.001984
Target:  5'- cAUGUCCGGCGACGACGGAUUCGCCAUc -3'
miRNA:   3'- -UACAGGCCGCUGCUGCCUAAGCGGUA- -5'
19075 3' -57.4 NC_004684.1 + 31395 0.66 0.662102
Target:  5'- cUGUCCGGCGGgcaccacccCGACuGug-CGCCAg -3'
miRNA:   3'- uACAGGCCGCU---------GCUGcCuaaGCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.