miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 3' -63.1 NC_004684.1 + 25063 0.66 0.390782
Target:  5'- -gGUG-GCCaGGGC--GGCCGGGUUGg -3'
miRNA:   3'- agCACgCGGaCCUGcuCCGGCCCGAC- -5'
19076 3' -63.1 NC_004684.1 + 26529 0.8 0.036779
Target:  5'- aCGUgucGCGCCUGGGCGgucAGGCCGGGgUGu -3'
miRNA:   3'- aGCA---CGCGGACCUGC---UCCGGCCCgAC- -5'
19076 3' -63.1 NC_004684.1 + 27701 0.66 0.382369
Target:  5'- --uUGCgGCCUGGugGAaagcgaauacGGCCcGGGCa- -3'
miRNA:   3'- agcACG-CGGACCugCU----------CCGG-CCCGac -5'
19076 3' -63.1 NC_004684.1 + 28262 0.67 0.334477
Target:  5'- cCG-GCcaGCCUGGugcGCGAGGCCGcuGGCg- -3'
miRNA:   3'- aGCaCG--CGGACC---UGCUCCGGC--CCGac -5'
19076 3' -63.1 NC_004684.1 + 29430 0.73 0.134235
Target:  5'- aUCGUGCGCCcGGACcc-GCUGGGCg- -3'
miRNA:   3'- -AGCACGCGGaCCUGcucCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 36916 0.7 0.223285
Target:  5'- -gGUGgcauCGCCcGGuCGAGGCCGGGUg- -3'
miRNA:   3'- agCAC----GCGGaCCuGCUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 41618 0.68 0.298034
Target:  5'- gCGUGcCGCCgguggagccGGACGccAGGCCGGGg-- -3'
miRNA:   3'- aGCAC-GCGGa--------CCUGC--UCCGGCCCgac -5'
19076 3' -63.1 NC_004684.1 + 47221 0.66 0.399315
Target:  5'- aCGUGCGCgUcGaACGccgcaaGGGCCGGGCc- -3'
miRNA:   3'- aGCACGCGgAcC-UGC------UCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 54370 0.67 0.349941
Target:  5'- ---aGUGCCggGGGCGGGGUCGaGGCc- -3'
miRNA:   3'- agcaCGCGGa-CCUGCUCCGGC-CCGac -5'
19076 3' -63.1 NC_004684.1 + 54628 0.69 0.25846
Target:  5'- gCGcGCGCgaGGACGGGGUguugUGGGCg- -3'
miRNA:   3'- aGCaCGCGgaCCUGCUCCG----GCCCGac -5'
19076 3' -63.1 NC_004684.1 + 56044 0.66 0.382369
Target:  5'- cCGUGgGCCUGGAgGccGCCGucaaGGCg- -3'
miRNA:   3'- aGCACgCGGACCUgCucCGGC----CCGac -5'
19076 3' -63.1 NC_004684.1 + 56880 0.68 0.291125
Target:  5'- -gGUGCGCCUGaccgucGGCGGcccagugcgucGGCCGGGUc- -3'
miRNA:   3'- agCACGCGGAC------CUGCU-----------CCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 57888 0.7 0.200147
Target:  5'- -gGUGCuGgCUGGugGccgggcugaagguGGCCGGGCUGa -3'
miRNA:   3'- agCACG-CgGACCugCu------------CCGGCCCGAC- -5'
19076 3' -63.1 NC_004684.1 + 61400 0.73 0.134235
Target:  5'- -gGUGCGCCUGaGCcAGGCCGGGaCUu -3'
miRNA:   3'- agCACGCGGACcUGcUCCGGCCC-GAc -5'
19076 3' -63.1 NC_004684.1 + 61697 0.73 0.120881
Target:  5'- gUCG-GUGCCgUGGGC-AGGCCGGGCc- -3'
miRNA:   3'- -AGCaCGCGG-ACCUGcUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 62784 0.66 0.390782
Target:  5'- gUUG-GUGCCUGcccGGCGGGguuGCCGGGCa- -3'
miRNA:   3'- -AGCaCGCGGAC---CUGCUC---CGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 63263 0.67 0.349941
Target:  5'- cCGaUGCGCucCUGGACcugGAGccGCCGGGCg- -3'
miRNA:   3'- aGC-ACGCG--GACCUG---CUC--CGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 65461 0.67 0.342146
Target:  5'- cCGUGCGCC-GGuACcAGGCCcGGCa- -3'
miRNA:   3'- aGCACGCGGaCC-UGcUCCGGcCCGac -5'
19076 3' -63.1 NC_004684.1 + 66140 0.73 0.130775
Target:  5'- ---aGCGCauCUGGGcCGGGGCCGGGCg- -3'
miRNA:   3'- agcaCGCG--GACCU-GCUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 66343 0.69 0.252297
Target:  5'- -gGUGaCGCCgGGGCGGgcGGCCaGGGCg- -3'
miRNA:   3'- agCAC-GCGGaCCUGCU--CCGG-CCCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.