Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19076 | 3' | -63.1 | NC_004684.1 | + | 3220 | 0.75 | 0.087891 |
Target: 5'- aCGUGCGCCUGGAaGAGGUgcgccgcauccUGGGcCUGa -3' miRNA: 3'- aGCACGCGGACCUgCUCCG-----------GCCC-GAC- -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 5588 | 0.69 | 0.25846 |
Target: 5'- gCGaccCGCCUGccGACGGGGCCGaGCUGg -3' miRNA: 3'- aGCac-GCGGAC--CUGCUCCGGCcCGAC- -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 5791 | 0.66 | 0.365907 |
Target: 5'- --cUGCGCCaGGcguGCGAGGUCGGGaCg- -3' miRNA: 3'- agcACGCGGaCC---UGCUCCGGCCC-Gac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 5860 | 0.72 | 0.152834 |
Target: 5'- gCGUGCGaCUGG-C-AGGCCGGGCa- -3' miRNA: 3'- aGCACGCgGACCuGcUCCGGCCCGac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 11600 | 0.76 | 0.0728 |
Target: 5'- -gGUGCGCCUGGACGAcGGCacCGaGCUGg -3' miRNA: 3'- agCACGCGGACCUGCU-CCG--GCcCGAC- -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 12658 | 0.7 | 0.217834 |
Target: 5'- aUGUGCGCgagcugcgcucgCUGGugGAGGCCGacgaGGCc- -3' miRNA: 3'- aGCACGCG------------GACCugCUCCGGC----CCGac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 13734 | 0.67 | 0.349156 |
Target: 5'- gUGUGCGCCUGcgcuucaccGACGGGGUgcuccagcgcaugCGGGUg- -3' miRNA: 3'- aGCACGCGGAC---------CUGCUCCG-------------GCCCGac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 15501 | 0.66 | 0.382369 |
Target: 5'- ---aGUuCCUGGAcaaggccgccCGGGGCCGGGCg- -3' miRNA: 3'- agcaCGcGGACCU----------GCUCCGGCCCGac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 15613 | 0.69 | 0.240336 |
Target: 5'- cCGgGUGCCcgaaGGcaacgcgcGCGAGGCCGGGUUGc -3' miRNA: 3'- aGCaCGCGGa---CC--------UGCUCCGGCCCGAC- -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 16454 | 1.07 | 0.000309 |
Target: 5'- aUCGUGCGCCUGGACGAGGCCGGGCUGu -3' miRNA: 3'- -AGCACGCGGACCUGCUCCGGCCCGAC- -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 17540 | 0.66 | 0.385719 |
Target: 5'- aCGUGgucgccuaccaggacCGCCUGGACGAGGUgCGcGCa- -3' miRNA: 3'- aGCAC---------------GCGGACCUGCUCCG-GCcCGac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 17758 | 0.67 | 0.305069 |
Target: 5'- -gGUGCuCCUGGA-GccGCUGGGCUGg -3' miRNA: 3'- agCACGcGGACCUgCucCGGCCCGAC- -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 18371 | 0.66 | 0.382369 |
Target: 5'- --cUGCGCCggUGGccgaucuguucaGCGGGGUCGGGCc- -3' miRNA: 3'- agcACGCGG--ACC------------UGCUCCGGCCCGac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 18455 | 0.73 | 0.130775 |
Target: 5'- aCGUGcCGUUcgGcGACGAGGCCGGGCc- -3' miRNA: 3'- aGCAC-GCGGa-C-CUGCUCCGGCCCGac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 19547 | 0.67 | 0.342146 |
Target: 5'- -gGUGCGCC-GGGCGgugccAGGucuCCGGGcCUGg -3' miRNA: 3'- agCACGCGGaCCUGC-----UCC---GGCCC-GAC- -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 20322 | 0.68 | 0.264744 |
Target: 5'- -gGUGC-CCUGGcAauGGGCCGGGCa- -3' miRNA: 3'- agCACGcGGACC-UgcUCCGGCCCGac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 22701 | 0.7 | 0.223285 |
Target: 5'- cCGgcgGCGCa-GGACGuggccaAGGCCGuGGCUGg -3' miRNA: 3'- aGCa--CGCGgaCCUGC------UCCGGC-CCGAC- -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 23555 | 0.66 | 0.374076 |
Target: 5'- aUCGgucGCgGCCUGGAC-AGccuGCCGGGCc- -3' miRNA: 3'- -AGCa--CG-CGGACCUGcUC---CGGCCCGac -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 23771 | 0.66 | 0.365907 |
Target: 5'- ---cGCGCUcGGccacacCGuGGCCGGGCUGu -3' miRNA: 3'- agcaCGCGGaCCu-----GCuCCGGCCCGAC- -5' |
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19076 | 3' | -63.1 | NC_004684.1 | + | 24510 | 0.66 | 0.399315 |
Target: 5'- cUCG-GUGCCa----GAGGCCGGGCg- -3' miRNA: 3'- -AGCaCGCGGaccugCUCCGGCCCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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