miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 3' -63.1 NC_004684.1 + 15501 0.66 0.382369
Target:  5'- ---aGUuCCUGGAcaaggccgccCGGGGCCGGGCg- -3'
miRNA:   3'- agcaCGcGGACCU----------GCUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 28262 0.67 0.334477
Target:  5'- cCG-GCcaGCCUGGugcGCGAGGCCGcuGGCg- -3'
miRNA:   3'- aGCaCG--CGGACC---UGCUCCGGC--CCGac -5'
19076 3' -63.1 NC_004684.1 + 19547 0.67 0.342146
Target:  5'- -gGUGCGCC-GGGCGgugccAGGucuCCGGGcCUGg -3'
miRNA:   3'- agCACGCGGaCCUGC-----UCC---GGCCC-GAC- -5'
19076 3' -63.1 NC_004684.1 + 65461 0.67 0.342146
Target:  5'- cCGUGCGCC-GGuACcAGGCCcGGCa- -3'
miRNA:   3'- aGCACGCGGaCC-UGcUCCGGcCCGac -5'
19076 3' -63.1 NC_004684.1 + 54370 0.67 0.349941
Target:  5'- ---aGUGCCggGGGCGGGGUCGaGGCc- -3'
miRNA:   3'- agcaCGCGGa-CCUGCUCCGGC-CCGac -5'
19076 3' -63.1 NC_004684.1 + 5791 0.66 0.365907
Target:  5'- --cUGCGCCaGGcguGCGAGGUCGGGaCg- -3'
miRNA:   3'- agcACGCGGaCC---UGCUCCGGCCC-Gac -5'
19076 3' -63.1 NC_004684.1 + 23555 0.66 0.374076
Target:  5'- aUCGgucGCgGCCUGGAC-AGccuGCCGGGCc- -3'
miRNA:   3'- -AGCa--CG-CGGACCUGcUC---CGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 27701 0.66 0.382369
Target:  5'- --uUGCgGCCUGGugGAaagcgaauacGGCCcGGGCa- -3'
miRNA:   3'- agcACG-CGGACCugCU----------CCGG-CCCGac -5'
19076 3' -63.1 NC_004684.1 + 56044 0.66 0.382369
Target:  5'- cCGUGgGCCUGGAgGccGCCGucaaGGCg- -3'
miRNA:   3'- aGCACgCGGACCUgCucCGGC----CCGac -5'
19076 3' -63.1 NC_004684.1 + 54628 0.69 0.25846
Target:  5'- gCGcGCGCgaGGACGGGGUguugUGGGCg- -3'
miRNA:   3'- aGCaCGCGgaCCUGCUCCG----GCCCGac -5'
19076 3' -63.1 NC_004684.1 + 66343 0.69 0.252297
Target:  5'- -gGUGaCGCCgGGGCGGgcGGCCaGGGCg- -3'
miRNA:   3'- agCAC-GCGGaCCUGCU--CCGG-CCCGac -5'
19076 3' -63.1 NC_004684.1 + 15613 0.69 0.240336
Target:  5'- cCGgGUGCCcgaaGGcaacgcgcGCGAGGCCGGGUUGc -3'
miRNA:   3'- aGCaCGCGGa---CC--------UGCUCCGGCCCGAC- -5'
19076 3' -63.1 NC_004684.1 + 11600 0.76 0.0728
Target:  5'- -gGUGCGCCUGGACGAcGGCacCGaGCUGg -3'
miRNA:   3'- agCACGCGGACCUGCU-CCG--GCcCGAC- -5'
19076 3' -63.1 NC_004684.1 + 61697 0.73 0.120881
Target:  5'- gUCG-GUGCCgUGGGC-AGGCCGGGCc- -3'
miRNA:   3'- -AGCaCGCGG-ACCUGcUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 29430 0.73 0.134235
Target:  5'- aUCGUGCGCCcGGACcc-GCUGGGCg- -3'
miRNA:   3'- -AGCACGCGGaCCUGcucCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 5860 0.72 0.152834
Target:  5'- gCGUGCGaCUGG-C-AGGCCGGGCa- -3'
miRNA:   3'- aGCACGCgGACCuGcUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 57888 0.7 0.200147
Target:  5'- -gGUGCuGgCUGGugGccgggcugaagguGGCCGGGCUGa -3'
miRNA:   3'- agCACG-CgGACCugCu------------CCGGCCCGAC- -5'
19076 3' -63.1 NC_004684.1 + 12658 0.7 0.217834
Target:  5'- aUGUGCGCgagcugcgcucgCUGGugGAGGCCGacgaGGCc- -3'
miRNA:   3'- aGCACGCG------------GACCugCUCCGGC----CCGac -5'
19076 3' -63.1 NC_004684.1 + 36916 0.7 0.223285
Target:  5'- -gGUGgcauCGCCcGGuCGAGGCCGGGUg- -3'
miRNA:   3'- agCAC----GCGGaCCuGCUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 22701 0.7 0.223285
Target:  5'- cCGgcgGCGCa-GGACGuggccaAGGCCGuGGCUGg -3'
miRNA:   3'- aGCa--CGCGgaCCUGC------UCCGGC-CCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.