miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 5' -57.9 NC_004684.1 + 33119 0.67 0.525887
Target:  5'- cGC-GCUGGCCAaggugcucggcauUGCGCuGuCGAGCa- -3'
miRNA:   3'- aCGuCGACCGGU-------------ACGUG-CuGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 57680 0.67 0.520677
Target:  5'- aGCAGgUGGCCAucggccaggcauggcUGCGCaACGAGaUGg -3'
miRNA:   3'- aCGUCgACCGGU---------------ACGUGcUGCUCgAC- -5'
19076 5' -57.9 NC_004684.1 + 2077 0.67 0.516524
Target:  5'- gGC-GCUGGCCgugGUGCACaGCGAGg-- -3'
miRNA:   3'- aCGuCGACCGG---UACGUGcUGCUCgac -5'
19076 5' -57.9 NC_004684.1 + 3843 0.67 0.516524
Target:  5'- gGCAGCggccgaggaGGCCGaGCGCcacgcccGCGAGCUGc -3'
miRNA:   3'- aCGUCGa--------CCGGUaCGUGc------UGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 63895 0.67 0.516524
Target:  5'- uUGCGGCguccuggcGGCCAcggUGCGgccCGGCGuGGCUGa -3'
miRNA:   3'- -ACGUCGa-------CCGGU---ACGU---GCUGC-UCGAC- -5'
19076 5' -57.9 NC_004684.1 + 29757 0.67 0.516524
Target:  5'- gGCGGCcaUGGCCAgcGCAcCGACG-GCg- -3'
miRNA:   3'- aCGUCG--ACCGGUa-CGU-GCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 42522 0.67 0.516524
Target:  5'- gGCGcGCUcaccGCCGUGguCGGCGuGCUGa -3'
miRNA:   3'- aCGU-CGAc---CGGUACguGCUGCuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 19610 0.67 0.5062
Target:  5'- aGguGCUGGCgGUGacgcuCGGCGAcaccguGCUGg -3'
miRNA:   3'- aCguCGACCGgUACgu---GCUGCU------CGAC- -5'
19076 5' -57.9 NC_004684.1 + 48992 0.67 0.5062
Target:  5'- gUGCccuGCUGGCCggGCcCGACcccGCUGa -3'
miRNA:   3'- -ACGu--CGACCGGuaCGuGCUGcu-CGAC- -5'
19076 5' -57.9 NC_004684.1 + 22280 0.67 0.5062
Target:  5'- gGCGGC-GGCCAaggcccGCGCGGCG-GCg- -3'
miRNA:   3'- aCGUCGaCCGGUa-----CGUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 61111 0.67 0.500047
Target:  5'- aGgAGCUGGCCAgcuacgacaccaagaUGgGCGACGcGCa- -3'
miRNA:   3'- aCgUCGACCGGU---------------ACgUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 58039 0.67 0.495964
Target:  5'- cGCcgaugAGCUGcGUCugGUGCGCcACGAGCUGa -3'
miRNA:   3'- aCG-----UCGAC-CGG--UACGUGcUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 22010 0.67 0.495964
Target:  5'- gUGgAGCUGGUCA-GCAuCGACcuGCUGg -3'
miRNA:   3'- -ACgUCGACCGGUaCGU-GCUGcuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 24133 0.67 0.495964
Target:  5'- cGCGGCgacaUGGCCGUGCucucCGgcccGCGcGCUGg -3'
miRNA:   3'- aCGUCG----ACCGGUACGu---GC----UGCuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 10588 0.67 0.495964
Target:  5'- -cCGGCUGGUUcgGCGCG-CGAGgUGc -3'
miRNA:   3'- acGUCGACCGGuaCGUGCuGCUCgAC- -5'
19076 5' -57.9 NC_004684.1 + 7711 0.67 0.494946
Target:  5'- cGCAGCUcggcgcaggaaagGGUCaAUGCGCGACuGGCg- -3'
miRNA:   3'- aCGUCGA-------------CCGG-UACGUGCUGcUCGac -5'
19076 5' -57.9 NC_004684.1 + 47909 0.68 0.485824
Target:  5'- aGCGGCUGGCuccaggggcgCAUGuCGCG-CGGGCc- -3'
miRNA:   3'- aCGUCGACCG----------GUAC-GUGCuGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 530 0.68 0.485824
Target:  5'- cGCugacguGCUGGCCA-GCGCGGuCGAGg-- -3'
miRNA:   3'- aCGu-----CGACCGGUaCGUGCU-GCUCgac -5'
19076 5' -57.9 NC_004684.1 + 40711 0.68 0.485824
Target:  5'- gGCGGCggUGGCCGggacgaccaGCGCGGCGGGg-- -3'
miRNA:   3'- aCGUCG--ACCGGUa--------CGUGCUGCUCgac -5'
19076 5' -57.9 NC_004684.1 + 26425 0.68 0.479787
Target:  5'- gGCAGCgggguucgccgccggUGGCCcgGUGUACGGCG-GCa- -3'
miRNA:   3'- aCGUCG---------------ACCGG--UACGUGCUGCuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.