miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 5' -57.9 NC_004684.1 + 10094 0.7 0.36787
Target:  5'- gGCagGGCUGGCCGggGUGCGGCucgccgucacaggccGAGCUGu -3'
miRNA:   3'- aCG--UCGACCGGUa-CGUGCUG---------------CUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 10241 0.97 0.004402
Target:  5'- aGCAGCUGGCCGUGCGCGugGAGCg- -3'
miRNA:   3'- aCGUCGACCGGUACGUGCugCUCGac -5'
19076 5' -57.9 NC_004684.1 + 10588 0.67 0.495964
Target:  5'- -cCGGCUGGUUcgGCGCG-CGAGgUGc -3'
miRNA:   3'- acGUCGACCGGuaCGUGCuGCUCgAC- -5'
19076 5' -57.9 NC_004684.1 + 10633 0.76 0.149042
Target:  5'- gGCGuGCUGGCCGaGgACGAgGAGCUGc -3'
miRNA:   3'- aCGU-CGACCGGUaCgUGCUgCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 11379 0.71 0.308365
Target:  5'- aGCAGCgUGGUgGUGCGCGACuuGCc- -3'
miRNA:   3'- aCGUCG-ACCGgUACGUGCUGcuCGac -5'
19076 5' -57.9 NC_004684.1 + 12022 0.68 0.446304
Target:  5'- gGCGGCgguggccaaGGCCAUGCuCGACcAGCa- -3'
miRNA:   3'- aCGUCGa--------CCGGUACGuGCUGcUCGac -5'
19076 5' -57.9 NC_004684.1 + 12058 0.74 0.210886
Target:  5'- gGCGGCucgccUGGCCGccgaGCGCGACGAgguGCUGg -3'
miRNA:   3'- aCGUCG-----ACCGGUa---CGUGCUGCU---CGAC- -5'
19076 5' -57.9 NC_004684.1 + 14928 0.69 0.408642
Target:  5'- gGUGGC-GGCCAUGC-CGuCGGGCa- -3'
miRNA:   3'- aCGUCGaCCGGUACGuGCuGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 15588 0.72 0.27249
Target:  5'- cGCGGcCUGGCCGUGgaccgggacuacCugGACGAGUa- -3'
miRNA:   3'- aCGUC-GACCGGUAC------------GugCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 15735 0.66 0.569272
Target:  5'- -cCAGCaagGGCCucGUGCACGGCcagcAGCUGc -3'
miRNA:   3'- acGUCGa--CCGG--UACGUGCUGc---UCGAC- -5'
19076 5' -57.9 NC_004684.1 + 16346 0.71 0.300911
Target:  5'- aGCGGCUGGCgcugGC-CGACaAGCUGg -3'
miRNA:   3'- aCGUCGACCGgua-CGuGCUGcUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 16490 1.09 0.000576
Target:  5'- gUGCAGCUGGCCAUGCACGACGAGCUGg -3'
miRNA:   3'- -ACGUCGACCGGUACGUGCUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 16751 0.68 0.436706
Target:  5'- cGCGGCUGGCCuggaacucGCGgGgAUGAGCg- -3'
miRNA:   3'- aCGUCGACCGGua------CGUgC-UGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 18310 0.7 0.356029
Target:  5'- cUGcCGGUUGGCggcgaCGUGgGCGACGAGCa- -3'
miRNA:   3'- -AC-GUCGACCG-----GUACgUGCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 19610 0.67 0.5062
Target:  5'- aGguGCUGGCgGUGacgcuCGGCGAcaccguGCUGg -3'
miRNA:   3'- aCguCGACCGgUACgu---GCUGCU------CGAC- -5'
19076 5' -57.9 NC_004684.1 + 20049 0.66 0.569272
Target:  5'- cGUGGCcuggUGGCCAUGCuCGACGcccacaccGGCg- -3'
miRNA:   3'- aCGUCG----ACCGGUACGuGCUGC--------UCGac -5'
19076 5' -57.9 NC_004684.1 + 20629 0.67 0.547973
Target:  5'- gGCgAGC--GCCA-GCGCGuCGAGCUGa -3'
miRNA:   3'- aCG-UCGacCGGUaCGUGCuGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 22010 0.67 0.495964
Target:  5'- gUGgAGCUGGUCA-GCAuCGACcuGCUGg -3'
miRNA:   3'- -ACgUCGACCGGUaCGU-GCUGcuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 22196 0.66 0.58
Target:  5'- cUGCcGCUGGa---GCGCGGCGGGgUGg -3'
miRNA:   3'- -ACGuCGACCgguaCGUGCUGCUCgAC- -5'
19076 5' -57.9 NC_004684.1 + 22213 0.75 0.175228
Target:  5'- cGCAGgUGGCCucccUGCGCGACG-GCa- -3'
miRNA:   3'- aCGUCgACCGGu---ACGUGCUGCuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.