miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 5' -57.9 NC_004684.1 + 348 0.66 0.578925
Target:  5'- gGCgGGCaaccacacccugaUGGCCAUGCGCGACcuGGCc- -3'
miRNA:   3'- aCG-UCG-------------ACCGGUACGUGCUGc-UCGac -5'
19076 5' -57.9 NC_004684.1 + 530 0.68 0.485824
Target:  5'- cGCugacguGCUGGCCA-GCGCGGuCGAGg-- -3'
miRNA:   3'- aCGu-----CGACCGGUaCGUGCU-GCUCgac -5'
19076 5' -57.9 NC_004684.1 + 783 0.72 0.279387
Target:  5'- gGCaccaAGCUGGCCAagaaccaggucgUGCGCGACG-GCa- -3'
miRNA:   3'- aCG----UCGACCGGU------------ACGUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 1416 0.76 0.153145
Target:  5'- gGCGGCUGaGCC-UGCGCGACccGCUGu -3'
miRNA:   3'- aCGUCGAC-CGGuACGUGCUGcuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 1493 0.66 0.558594
Target:  5'- gGCGGCccuggUGGCCAaccUGCGCGcCGcGCUc -3'
miRNA:   3'- aCGUCG-----ACCGGU---ACGUGCuGCuCGAc -5'
19076 5' -57.9 NC_004684.1 + 2077 0.67 0.516524
Target:  5'- gGC-GCUGGCCgugGUGCACaGCGAGg-- -3'
miRNA:   3'- aCGuCGACCGG---UACGUGcUGCUCgac -5'
19076 5' -57.9 NC_004684.1 + 2630 0.74 0.194894
Target:  5'- gGCGG-UGGCCAacGCAUGAgCGAGCUGg -3'
miRNA:   3'- aCGUCgACCGGUa-CGUGCU-GCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 3843 0.67 0.516524
Target:  5'- gGCAGCggccgaggaGGCCGaGCGCcacgcccGCGAGCUGc -3'
miRNA:   3'- aCGUCGa--------CCGGUaCGUGc------UGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 4449 0.7 0.356029
Target:  5'- cGCAGCUGGaggccgcaCGUGCGCG-CGAGg-- -3'
miRNA:   3'- aCGUCGACCg-------GUACGUGCuGCUCgac -5'
19076 5' -57.9 NC_004684.1 + 4834 0.72 0.252618
Target:  5'- -cCGGCcgacaaGGCCAaGCugGACGAGCUGc -3'
miRNA:   3'- acGUCGa-----CCGGUaCGugCUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 5239 0.67 0.537417
Target:  5'- aGCccuGCgcaaGGCCggGCACGGCGAgGCg- -3'
miRNA:   3'- aCGu--CGa---CCGGuaCGUGCUGCU-CGac -5'
19076 5' -57.9 NC_004684.1 + 5531 0.66 0.59077
Target:  5'- cGCAGCUGGUgGaugagGCGCaGaACGuGCUGc -3'
miRNA:   3'- aCGUCGACCGgUa----CGUG-C-UGCuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 5925 0.66 0.58
Target:  5'- -cCGGCUGGCCGcGCugGccacCGGGCg- -3'
miRNA:   3'- acGUCGACCGGUaCGugCu---GCUCGac -5'
19076 5' -57.9 NC_004684.1 + 6365 0.68 0.475783
Target:  5'- gGCGGCgaUGGCC-UGCGCGuuGCGcAGCg- -3'
miRNA:   3'- aCGUCG--ACCGGuACGUGC--UGC-UCGac -5'
19076 5' -57.9 NC_004684.1 + 6832 0.72 0.286423
Target:  5'- aGgAGCUGGCCuacgGCGCGAaGGGCg- -3'
miRNA:   3'- aCgUCGACCGGua--CGUGCUgCUCGac -5'
19076 5' -57.9 NC_004684.1 + 7711 0.67 0.494946
Target:  5'- cGCAGCUcggcgcaggaaagGGUCaAUGCGCGACuGGCg- -3'
miRNA:   3'- aCGUCGA-------------CCGG-UACGUGCUGcUCGac -5'
19076 5' -57.9 NC_004684.1 + 7854 0.66 0.59077
Target:  5'- cGCGcGCUGGCgGUGCAgGACcuguGCg- -3'
miRNA:   3'- aCGU-CGACCGgUACGUgCUGcu--CGac -5'
19076 5' -57.9 NC_004684.1 + 8198 0.68 0.465847
Target:  5'- cGCAGCUGaUCAaGCGCGugGucgagcAGCUGa -3'
miRNA:   3'- aCGUCGACcGGUaCGUGCugC------UCGAC- -5'
19076 5' -57.9 NC_004684.1 + 9287 0.69 0.427227
Target:  5'- cGCGGacccGGCCAUGCuCGGCGcGCUc -3'
miRNA:   3'- aCGUCga--CCGGUACGuGCUGCuCGAc -5'
19076 5' -57.9 NC_004684.1 + 9662 0.75 0.170596
Target:  5'- gGCGGCggugaagcGcGCgGUGUACGGCGAGCUGa -3'
miRNA:   3'- aCGUCGa-------C-CGgUACGUGCUGCUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.