miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 5' -57.9 NC_004684.1 + 16490 1.09 0.000576
Target:  5'- gUGCAGCUGGCCAUGCACGACGAGCUGg -3'
miRNA:   3'- -ACGUCGACCGGUACGUGCUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 10241 0.97 0.004402
Target:  5'- aGCAGCUGGCCGUGCGCGugGAGCg- -3'
miRNA:   3'- aCGUCGACCGGUACGUGCugCUCGac -5'
19076 5' -57.9 NC_004684.1 + 51650 0.82 0.051238
Target:  5'- aGCuGCUGGCCGUGCACGAgGcccuuGCUGg -3'
miRNA:   3'- aCGuCGACCGGUACGUGCUgCu----CGAC- -5'
19076 5' -57.9 NC_004684.1 + 30201 0.8 0.080872
Target:  5'- aGCAGCUGGCCGcGCGCGuCGAuGCUc -3'
miRNA:   3'- aCGUCGACCGGUaCGUGCuGCU-CGAc -5'
19076 5' -57.9 NC_004684.1 + 23407 0.78 0.104146
Target:  5'- cGCAGCUGGCCggGUACGcccGCGcacGGCUGa -3'
miRNA:   3'- aCGUCGACCGGuaCGUGC---UGC---UCGAC- -5'
19076 5' -57.9 NC_004684.1 + 62657 0.78 0.113218
Target:  5'- uUGCGGCugUGGCCGUGCGCGAgGucCUGg -3'
miRNA:   3'- -ACGUCG--ACCGGUACGUGCUgCucGAC- -5'
19076 5' -57.9 NC_004684.1 + 10633 0.76 0.149042
Target:  5'- gGCGuGCUGGCCGaGgACGAgGAGCUGc -3'
miRNA:   3'- aCGU-CGACCGGUaCgUGCUgCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 1416 0.76 0.153145
Target:  5'- gGCGGCUGaGCC-UGCGCGACccGCUGu -3'
miRNA:   3'- aCGUCGAC-CGGuACGUGCUGcuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 64912 0.75 0.170596
Target:  5'- aGCAGCUccaGGUCAggugguacgGCACGcCGAGCUGg -3'
miRNA:   3'- aCGUCGA---CCGGUa--------CGUGCuGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 9662 0.75 0.170596
Target:  5'- gGCGGCggugaagcGcGCgGUGUACGGCGAGCUGa -3'
miRNA:   3'- aCGUCGa-------C-CGgUACGUGCUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 22213 0.75 0.175228
Target:  5'- cGCAGgUGGCCucccUGCGCGACG-GCa- -3'
miRNA:   3'- aCGUCgACCGGu---ACGUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 2630 0.74 0.194894
Target:  5'- gGCGG-UGGCCAacGCAUGAgCGAGCUGg -3'
miRNA:   3'- aCGUCgACCGGUa-CGUGCU-GCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 29109 0.74 0.205433
Target:  5'- aGCcgugAGCUGcGCCAgaccaGCACGuGCGAGCUGg -3'
miRNA:   3'- aCG----UCGAC-CGGUa----CGUGC-UGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 12058 0.74 0.210886
Target:  5'- gGCGGCucgccUGGCCGccgaGCGCGACGAgguGCUGg -3'
miRNA:   3'- aCGUCG-----ACCGGUa---CGUGCUGCU---CGAC- -5'
19076 5' -57.9 NC_004684.1 + 30079 0.73 0.222165
Target:  5'- gGUAGgcaaUGGCCAUGCugGACGcGCUc -3'
miRNA:   3'- aCGUCg---ACCGGUACGugCUGCuCGAc -5'
19076 5' -57.9 NC_004684.1 + 4834 0.72 0.252618
Target:  5'- -cCGGCcgacaaGGCCAaGCugGACGAGCUGc -3'
miRNA:   3'- acGUCGa-----CCGGUaCGugCUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 15588 0.72 0.27249
Target:  5'- cGCGGcCUGGCCGUGgaccgggacuacCugGACGAGUa- -3'
miRNA:   3'- aCGUC-GACCGGUAC------------GugCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 783 0.72 0.279387
Target:  5'- gGCaccaAGCUGGCCAagaaccaggucgUGCGCGACG-GCa- -3'
miRNA:   3'- aCG----UCGACCGGU------------ACGUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 22825 0.72 0.279387
Target:  5'- gGCAGUUcccGGCgGUGCAgGcCGGGCUGg -3'
miRNA:   3'- aCGUCGA---CCGgUACGUgCuGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 6832 0.72 0.286423
Target:  5'- aGgAGCUGGCCuacgGCGCGAaGGGCg- -3'
miRNA:   3'- aCgUCGACCGGua--CGUGCUgCUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.