miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 5' -57.9 NC_004684.1 + 63817 0.66 0.59077
Target:  5'- gUGguGCUGGUgAUggugcggaugGCGCGGCGcacGCUGu -3'
miRNA:   3'- -ACguCGACCGgUA----------CGUGCUGCu--CGAC- -5'
19076 5' -57.9 NC_004684.1 + 43466 0.66 0.569272
Target:  5'- cGCAGCUccGGgaAUGCA--GCGAGCUGu -3'
miRNA:   3'- aCGUCGA--CCggUACGUgcUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 37722 0.66 0.569272
Target:  5'- cGCGGuCUGGUCGgccGCGCGcAgGAGCa- -3'
miRNA:   3'- aCGUC-GACCGGUa--CGUGC-UgCUCGac -5'
19076 5' -57.9 NC_004684.1 + 27896 0.66 0.59077
Target:  5'- cGaCAGUUGGCCcgGCcuGCG-CGAGUUc -3'
miRNA:   3'- aC-GUCGACCGGuaCG--UGCuGCUCGAc -5'
19076 5' -57.9 NC_004684.1 + 55713 0.66 0.601574
Target:  5'- cGCAGCU-GCU-UGCGCGGCGGucacGUUGg -3'
miRNA:   3'- aCGUCGAcCGGuACGUGCUGCU----CGAC- -5'
19076 5' -57.9 NC_004684.1 + 58085 0.66 0.569272
Target:  5'- gUGCAGCUcGaCCGggaGCGCGcCGAGCa- -3'
miRNA:   3'- -ACGUCGAcC-GGUa--CGUGCuGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 50108 0.66 0.597248
Target:  5'- gGCGGCUGGCCcccaccucgaugGCcagguugauCGGCGGGCa- -3'
miRNA:   3'- aCGUCGACCGGua----------CGu--------GCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 5925 0.66 0.58
Target:  5'- -cCGGCUGGCCGcGCugGccacCGGGCg- -3'
miRNA:   3'- acGUCGACCGGUaCGugCu---GCUCGac -5'
19076 5' -57.9 NC_004684.1 + 348 0.66 0.578925
Target:  5'- gGCgGGCaaccacacccugaUGGCCAUGCGCGACcuGGCc- -3'
miRNA:   3'- aCG-UCG-------------ACCGGUACGUGCUGc-UCGac -5'
19076 5' -57.9 NC_004684.1 + 22727 0.66 0.59077
Target:  5'- cGUGGCUGGCac-GCGCGACcGGUUc -3'
miRNA:   3'- aCGUCGACCGguaCGUGCUGcUCGAc -5'
19076 5' -57.9 NC_004684.1 + 25497 0.66 0.569272
Target:  5'- cGCGGUcGGCCA-GCGCGuucaugucGCGGGCc- -3'
miRNA:   3'- aCGUCGaCCGGUaCGUGC--------UGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 52901 0.66 0.58
Target:  5'- aGgAGCguccGGCCA-GCACGGCG-GCg- -3'
miRNA:   3'- aCgUCGa---CCGGUaCGUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 50547 0.66 0.569272
Target:  5'- gGCugAGUUGGCCuuucgugGUugGugGAGCg- -3'
miRNA:   3'- aCG--UCGACCGGua-----CGugCugCUCGac -5'
19076 5' -57.9 NC_004684.1 + 20049 0.66 0.569272
Target:  5'- cGUGGCcuggUGGCCAUGCuCGACGcccacaccGGCg- -3'
miRNA:   3'- aCGUCG----ACCGGUACGuGCUGC--------UCGac -5'
19076 5' -57.9 NC_004684.1 + 1493 0.66 0.558594
Target:  5'- gGCGGCccuggUGGCCAaccUGCGCGcCGcGCUc -3'
miRNA:   3'- aCGUCG-----ACCGGU---ACGUGCuGCuCGAc -5'
19076 5' -57.9 NC_004684.1 + 41995 0.66 0.568202
Target:  5'- gGUA-CUGGCCgccgcuGUGCGCGGCGGcguaggcGCUGa -3'
miRNA:   3'- aCGUcGACCGG------UACGUGCUGCU-------CGAC- -5'
19076 5' -57.9 NC_004684.1 + 15735 0.66 0.569272
Target:  5'- -cCAGCaagGGCCucGUGCACGGCcagcAGCUGc -3'
miRNA:   3'- acGUCGa--CCGG--UACGUGCUGc---UCGAC- -5'
19076 5' -57.9 NC_004684.1 + 32420 0.66 0.564995
Target:  5'- aGCAGCggcaccucgggcgUGGCgAUGCAccucgacucgaacuCGGCGGGCa- -3'
miRNA:   3'- aCGUCG-------------ACCGgUACGU--------------GCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 33495 0.66 0.569272
Target:  5'- cGCGGCggcGGCCcUGUACucGCGGGCg- -3'
miRNA:   3'- aCGUCGa--CCGGuACGUGc-UGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 25027 0.66 0.558594
Target:  5'- gUGCAGCUGGaggcgGCAuCGACGuGGCg- -3'
miRNA:   3'- -ACGUCGACCggua-CGU-GCUGC-UCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.