miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 5' -57.9 NC_004684.1 + 16751 0.68 0.436706
Target:  5'- cGCGGCUGGCCuggaacucGCGgGgAUGAGCg- -3'
miRNA:   3'- aCGUCGACCGGua------CGUgC-UGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 27116 0.7 0.339582
Target:  5'- uUGC-GCUGGCCGUugccgggacGCugauCGACGuGCUGg -3'
miRNA:   3'- -ACGuCGACCGGUA---------CGu---GCUGCuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 44463 0.7 0.347736
Target:  5'- aGCAcGCUGGCCAccugcgUGCGCGugGAcCa- -3'
miRNA:   3'- aCGU-CGACCGGU------ACGUGCugCUcGac -5'
19076 5' -57.9 NC_004684.1 + 52319 0.7 0.356029
Target:  5'- cGCAGCUGcGCgGUGCGCaGGCcAGCg- -3'
miRNA:   3'- aCGUCGAC-CGgUACGUG-CUGcUCGac -5'
19076 5' -57.9 NC_004684.1 + 4449 0.7 0.356029
Target:  5'- cGCAGCUGGaggccgcaCGUGCGCG-CGAGg-- -3'
miRNA:   3'- aCGUCGACCg-------GUACGUGCuGCUCgac -5'
19076 5' -57.9 NC_004684.1 + 47178 0.69 0.381731
Target:  5'- gGCGGCcagGGCCGccgcUGCGCGGCGAacgguGCg- -3'
miRNA:   3'- aCGUCGa--CCGGU----ACGUGCUGCU-----CGac -5'
19076 5' -57.9 NC_004684.1 + 49616 0.69 0.39057
Target:  5'- uUGCGGCUGGCCGgUGUccagcccaGCGGCuccagGAGCa- -3'
miRNA:   3'- -ACGUCGACCGGU-ACG--------UGCUG-----CUCGac -5'
19076 5' -57.9 NC_004684.1 + 26307 0.69 0.417872
Target:  5'- cGCAGCUcGGCCAgGC-CGcCGGGCc- -3'
miRNA:   3'- aCGUCGA-CCGGUaCGuGCuGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 23760 0.69 0.417872
Target:  5'- cGCAGUucgGGCCGUgggGCGCGGCGuugGGCg- -3'
miRNA:   3'- aCGUCGa--CCGGUA---CGUGCUGC---UCGac -5'
19076 5' -57.9 NC_004684.1 + 30145 0.71 0.313666
Target:  5'- cGCAGUgugcgcgucGGCCAguggGCgaucaacgccgucgGCGGCGAGCUGg -3'
miRNA:   3'- aCGUCGa--------CCGGUa---CG--------------UGCUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 16346 0.71 0.300911
Target:  5'- aGCGGCUGGCgcugGC-CGACaAGCUGg -3'
miRNA:   3'- aCGUCGACCGgua-CGuGCUGcUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 6832 0.72 0.286423
Target:  5'- aGgAGCUGGCCuacgGCGCGAaGGGCg- -3'
miRNA:   3'- aCgUCGACCGGua--CGUGCUgCUCGac -5'
19076 5' -57.9 NC_004684.1 + 10633 0.76 0.149042
Target:  5'- gGCGuGCUGGCCGaGgACGAgGAGCUGc -3'
miRNA:   3'- aCGU-CGACCGGUaCgUGCUgCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 1416 0.76 0.153145
Target:  5'- gGCGGCUGaGCC-UGCGCGACccGCUGu -3'
miRNA:   3'- aCGUCGAC-CGGuACGUGCUGcuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 9662 0.75 0.170596
Target:  5'- gGCGGCggugaagcGcGCgGUGUACGGCGAGCUGa -3'
miRNA:   3'- aCGUCGa-------C-CGgUACGUGCUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 22213 0.75 0.175228
Target:  5'- cGCAGgUGGCCucccUGCGCGACG-GCa- -3'
miRNA:   3'- aCGUCgACCGGu---ACGUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 2630 0.74 0.194894
Target:  5'- gGCGG-UGGCCAacGCAUGAgCGAGCUGg -3'
miRNA:   3'- aCGUCgACCGGUa-CGUGCU-GCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 29109 0.74 0.205433
Target:  5'- aGCcgugAGCUGcGCCAgaccaGCACGuGCGAGCUGg -3'
miRNA:   3'- aCG----UCGAC-CGGUa----CGUGC-UGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 12058 0.74 0.210886
Target:  5'- gGCGGCucgccUGGCCGccgaGCGCGACGAgguGCUGg -3'
miRNA:   3'- aCGUCG-----ACCGGUa---CGUGCUGCU---CGAC- -5'
19076 5' -57.9 NC_004684.1 + 22825 0.72 0.279387
Target:  5'- gGCAGUUcccGGCgGUGCAgGcCGGGCUGg -3'
miRNA:   3'- aCGUCGA---CCGgUACGUgCuGCUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.