miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19078 3' -58.8 NC_004684.1 + 15285 0.67 0.535765
Target:  5'- gCGGUGcaccUGCUGGgccuggucgacgUGGCCGGUGGCaUGGa -3'
miRNA:   3'- -GCUACc---GCGACU------------ACCGGCCACUG-GCC- -5'
19078 3' -58.8 NC_004684.1 + 15404 0.69 0.4201
Target:  5'- cCGGcagGGCGC-GAUGGCCGacaccGUGGCCa- -3'
miRNA:   3'- -GCUa--CCGCGaCUACCGGC-----CACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 15535 0.7 0.368192
Target:  5'- gGA-GGCGCUGAUccGcGuuGGUGgACCGGc -3'
miRNA:   3'- gCUaCCGCGACUA--C-CggCCAC-UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 16067 1.11 0.000474
Target:  5'- aCGAUGGCGCUGAUGGCCGGUGACCGGg -3'
miRNA:   3'- -GCUACCGCGACUACCGGCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 17282 0.69 0.411143
Target:  5'- uCGgcGGCGCUGGuuuucUGGCCGGggucgcGGCCc- -3'
miRNA:   3'- -GCuaCCGCGACU-----ACCGGCCa-----CUGGcc -5'
19078 3' -58.8 NC_004684.1 + 18025 0.67 0.576893
Target:  5'- -cGUGGCGUUGGaGGUCuG-GACCGGc -3'
miRNA:   3'- gcUACCGCGACUaCCGGcCaCUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 18462 0.68 0.476195
Target:  5'- aCGAcGGCaccgaGCUGGUGcuGUCGGUGuCCGGc -3'
miRNA:   3'- -GCUaCCG-----CGACUAC--CGGCCACuGGCC- -5'
19078 3' -58.8 NC_004684.1 + 18603 0.69 0.44766
Target:  5'- aCGAUGGCuuUGA-GGCCaGcGACUGGg -3'
miRNA:   3'- -GCUACCGcgACUaCCGGcCaCUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 18846 0.68 0.476195
Target:  5'- aGGUcGG-GUc-GUGGUCGGUGACCGGg -3'
miRNA:   3'- gCUA-CCgCGacUACCGGCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 21066 0.68 0.476195
Target:  5'- ---cGGUGCUGAccgggcaccugGGCCGGUcaGugCGGg -3'
miRNA:   3'- gcuaCCGCGACUa----------CCGGCCA--CugGCC- -5'
19078 3' -58.8 NC_004684.1 + 21385 0.69 0.44766
Target:  5'- aCGAcGuGCGCaccGUGGCCGGUGACUu- -3'
miRNA:   3'- -GCUaC-CGCGac-UACCGGCCACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 21990 0.68 0.485906
Target:  5'- aGGUGGUGCgccagGGuCCGGUGgaGCUGGu -3'
miRNA:   3'- gCUACCGCGacua-CC-GGCCAC--UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 22095 0.68 0.46658
Target:  5'- gCGAcGGCugGCUGGuguuccugUGGCCGGaaACCGGa -3'
miRNA:   3'- -GCUaCCG--CGACU--------ACCGGCCacUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 25048 0.69 0.457068
Target:  5'- cCGGuUGGCGauguaGGUGGCCaGGgcGGCCGGg -3'
miRNA:   3'- -GCU-ACCGCga---CUACCGG-CCa-CUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 25994 0.68 0.476195
Target:  5'- cCGcUGGCGCUccUGG-CGGcGGCCGGg -3'
miRNA:   3'- -GCuACCGCGAcuACCgGCCaCUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 27113 0.66 0.608195
Target:  5'- aCGAcGGCGCggucaacggGGUGGCCuucuacaaGGUcGACCGc -3'
miRNA:   3'- -GCUaCCGCGa--------CUACCGG--------CCA-CUGGCc -5'
19078 3' -58.8 NC_004684.1 + 27266 0.71 0.313429
Target:  5'- ---cGGCGUUc--GGCaCGGUGACCGGg -3'
miRNA:   3'- gcuaCCGCGAcuaCCG-GCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 28803 0.66 0.62917
Target:  5'- cCGAgcUGGUGCUcGAcGGU--GUGACCGGg -3'
miRNA:   3'- -GCU--ACCGCGA-CUaCCGgcCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 28904 0.66 0.608195
Target:  5'- uCGGUGGCcuuGCUGAc-GCCGGUG-CCu- -3'
miRNA:   3'- -GCUACCG---CGACUacCGGCCACuGGcc -5'
19078 3' -58.8 NC_004684.1 + 29510 0.66 0.587295
Target:  5'- uGAccUGGUGCaGAaaggccugcgcUGGUCGGUGguuGCCGGu -3'
miRNA:   3'- gCU--ACCGCGaCU-----------ACCGGCCAC---UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.