miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19078 3' -58.8 NC_004684.1 + 714 0.69 0.411143
Target:  5'- gGGUGGgaagacCUGGgcaccGCCGGUGACCGGg -3'
miRNA:   3'- gCUACCgc----GACUac---CGGCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 1074 0.68 0.49571
Target:  5'- uGgcGGCGCUGGacgUGaUCGGUGACCaGGc -3'
miRNA:   3'- gCuaCCGCGACU---ACcGGCCACUGG-CC- -5'
19078 3' -58.8 NC_004684.1 + 1266 0.67 0.528668
Target:  5'- aGAUGcGCugGCUGGUGGCCauguuccGGUacgcgcgcgacgcguGGCCGGa -3'
miRNA:   3'- gCUAC-CG--CGACUACCGG-------CCA---------------CUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 2043 0.69 0.457068
Target:  5'- uGGUGGCcCUGggGGCCGccaucGUGGCCu- -3'
miRNA:   3'- gCUACCGcGACuaCCGGC-----CACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 4038 0.73 0.26121
Target:  5'- -cAUGGCGaC-GGUGGCCuaccggccaucgccgGGUGACCGGg -3'
miRNA:   3'- gcUACCGC-GaCUACCGG---------------CCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 5181 0.7 0.359979
Target:  5'- aGGUGGCGCUGGuUGGCCaG-GACgGc -3'
miRNA:   3'- gCUACCGCGACU-ACCGGcCaCUGgCc -5'
19078 3' -58.8 NC_004684.1 + 5675 0.7 0.368192
Target:  5'- -cGUGGuCGgaGGUGGCCGG-GGCCcGGc -3'
miRNA:   3'- gcUACC-GCgaCUACCGGCCaCUGG-CC- -5'
19078 3' -58.8 NC_004684.1 + 5902 0.69 0.423715
Target:  5'- gCGgcGGCGCUGAucgcgcacgaccggcUGGCCGcGcUGgccACCGGg -3'
miRNA:   3'- -GCuaCCGCGACU---------------ACCGGC-C-AC---UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 6778 0.66 0.618677
Target:  5'- ---gGGCGac-GUGcGCCgGGUGACCGGc -3'
miRNA:   3'- gcuaCCGCgacUAC-CGG-CCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 7090 0.67 0.556219
Target:  5'- cCGA-GGCcCUGGaGGCCGccgagGACCGGg -3'
miRNA:   3'- -GCUaCCGcGACUaCCGGCca---CUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 7570 0.79 0.10726
Target:  5'- gGGUGGCGCUGGUgcGGCUGGUG-CgCGGc -3'
miRNA:   3'- gCUACCGCGACUA--CCGGCCACuG-GCC- -5'
19078 3' -58.8 NC_004684.1 + 8594 0.66 0.618677
Target:  5'- uGAacGCGCcGGUGGCCucgaacaagcccGGUGcACCGGc -3'
miRNA:   3'- gCUacCGCGaCUACCGG------------CCAC-UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 9197 0.69 0.411143
Target:  5'- aGGUugGGCGCa-GUGGgCGcGUGACCGGg -3'
miRNA:   3'- gCUA--CCGCGacUACCgGC-CACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 9532 0.66 0.62917
Target:  5'- cCGAccGCgaGCUGGUGcGCCGGUuggaGCCGGu -3'
miRNA:   3'- -GCUacCG--CGACUAC-CGGCCAc---UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 9924 0.71 0.351895
Target:  5'- cCGA-GGCGgUGAuugUGGCCGGgcUGACCa- -3'
miRNA:   3'- -GCUaCCGCgACU---ACCGGCC--ACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 13271 0.77 0.136425
Target:  5'- ---aGcGCGCUGGUGGCCgccGGUGGCUGGu -3'
miRNA:   3'- gcuaC-CGCGACUACCGG---CCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 13668 0.71 0.343152
Target:  5'- -cGUGGCGCacgguccaggacaUGGUGGCCGGU--UCGGg -3'
miRNA:   3'- gcUACCGCG-------------ACUACCGGCCAcuGGCC- -5'
19078 3' -58.8 NC_004684.1 + 14387 0.69 0.414712
Target:  5'- uGGUGGCGCUGGacgacgguuacucGGCCagcgacuucgacGUGACCGGu -3'
miRNA:   3'- gCUACCGCGACUa------------CCGGc-----------CACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 14500 0.67 0.545961
Target:  5'- aCGccGGuCGCcGGUGGCaCGGUGACgGu -3'
miRNA:   3'- -GCuaCC-GCGaCUACCG-GCCACUGgCc -5'
19078 3' -58.8 NC_004684.1 + 15245 0.67 0.544939
Target:  5'- uGGUGGCGgUuacgucGAUGGCCuggccaacacccuGGUGGCCa- -3'
miRNA:   3'- gCUACCGCgA------CUACCGG-------------CCACUGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.