miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19078 3' -58.8 NC_004684.1 + 48961 0.7 0.376533
Target:  5'- gGcgGGCGg-GGUGGCCGG-GGCgGGc -3'
miRNA:   3'- gCuaCCGCgaCUACCGGCCaCUGgCC- -5'
19078 3' -58.8 NC_004684.1 + 40689 0.72 0.298959
Target:  5'- aGGUGGCgacgaacuucaGCUGGgcGG-CGGUGGCCGGg -3'
miRNA:   3'- gCUACCG-----------CGACUa-CCgGCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 30507 0.72 0.306128
Target:  5'- gCGGcUGGCGCUGG-GGUCGGUGaaguucaccGCCGa -3'
miRNA:   3'- -GCU-ACCGCGACUaCCGGCCAC---------UGGCc -5'
19078 3' -58.8 NC_004684.1 + 64939 0.71 0.313429
Target:  5'- gCGGUGaGCGcCUGgcGGgCGGUGGcCCGGu -3'
miRNA:   3'- -GCUAC-CGC-GACuaCCgGCCACU-GGCC- -5'
19078 3' -58.8 NC_004684.1 + 27266 0.71 0.313429
Target:  5'- ---cGGCGUUc--GGCaCGGUGACCGGg -3'
miRNA:   3'- gcuaCCGCGAcuaCCG-GCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 13668 0.71 0.343152
Target:  5'- -cGUGGCGCacgguccaggacaUGGUGGCCGGU--UCGGg -3'
miRNA:   3'- gcUACCGCG-------------ACUACCGGCCAcuGGCC- -5'
19078 3' -58.8 NC_004684.1 + 9924 0.71 0.351895
Target:  5'- cCGA-GGCGgUGAuugUGGCCGGgcUGACCa- -3'
miRNA:   3'- -GCUaCCGCgACU---ACCGGCC--ACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 41415 0.7 0.359979
Target:  5'- gCGGUGGCGUcccccguggcggUGGUGcGgCGGUGccGCCGGu -3'
miRNA:   3'- -GCUACCGCG------------ACUAC-CgGCCAC--UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 15535 0.7 0.368192
Target:  5'- gGA-GGCGCUGAUccGcGuuGGUGgACCGGc -3'
miRNA:   3'- gCUaCCGCGACUA--C-CggCCAC-UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 55786 0.72 0.29192
Target:  5'- uCGAUGGCgGCgugaccgGGUGGuCCGGUGAgCGc -3'
miRNA:   3'- -GCUACCG-CGa------CUACC-GGCCACUgGCc -5'
19078 3' -58.8 NC_004684.1 + 39092 0.73 0.262489
Target:  5'- cCGGUGGUGCcuacgcacCCGGUGACCGGg -3'
miRNA:   3'- -GCUACCGCGacuacc--GGCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 4038 0.73 0.26121
Target:  5'- -cAUGGCGaC-GGUGGCCuaccggccaucgccgGGUGACCGGg -3'
miRNA:   3'- gcUACCGC-GaCUACCGG---------------CCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 55900 0.81 0.066916
Target:  5'- cCGAUGGCcuguuaccgccggaGCUGGUGGCCaaGGUGgACCGGg -3'
miRNA:   3'- -GCUACCG--------------CGACUACCGG--CCAC-UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 7570 0.79 0.10726
Target:  5'- gGGUGGCGCUGGUgcGGCUGGUG-CgCGGc -3'
miRNA:   3'- gCUACCGCGACUA--CCGGCCACuG-GCC- -5'
19078 3' -58.8 NC_004684.1 + 13271 0.77 0.136425
Target:  5'- ---aGcGCGCUGGUGGCCgccGGUGGCUGGu -3'
miRNA:   3'- gcuaC-CGCGACUACCGG---CCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 57886 0.77 0.136425
Target:  5'- cCGGUGcugGCUGGUGGCCGGgcugaaggUGGCCGGg -3'
miRNA:   3'- -GCUACcg-CGACUACCGGCC--------ACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 53763 0.75 0.181881
Target:  5'- aGGUGGUGaUGGUGGUCGGgucccaGACCGGc -3'
miRNA:   3'- gCUACCGCgACUACCGGCCa-----CUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 42204 0.74 0.222923
Target:  5'- -cGUGGaGCUGGUGGCCGacGUGGCCGc -3'
miRNA:   3'- gcUACCgCGACUACCGGC--CACUGGCc -5'
19078 3' -58.8 NC_004684.1 + 42942 0.73 0.234347
Target:  5'- uGAcGGCGCUuGUGGCUGcugugguuGUGGCCGGg -3'
miRNA:   3'- gCUaCCGCGAcUACCGGC--------CACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 55555 0.73 0.240241
Target:  5'- cCGcUGGcCGCc-GUGGcCCGGUGGCCGGg -3'
miRNA:   3'- -GCuACC-GCGacUACC-GGCCACUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.