miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19078 5' -48.5 NC_004684.1 + 16103 1.09 0.00646
Target:  5'- gCACCGUUCUUCGAAAAUGACGCCGACc -3'
miRNA:   3'- -GUGGCAAGAAGCUUUUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 55938 0.74 0.738331
Target:  5'- gACCGggg--CGAGGccGACGCCGACg -3'
miRNA:   3'- gUGGCaagaaGCUUUuaCUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 45851 0.74 0.749085
Target:  5'- uGCCGcgC-UCGuuGAUGGCGUCGGCg -3'
miRNA:   3'- gUGGCaaGaAGCuuUUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 20142 0.73 0.790713
Target:  5'- uGCgGUUCUUCGccGGUGACGgcCCGGCc -3'
miRNA:   3'- gUGgCAAGAAGCuuUUACUGC--GGCUG- -5'
19078 5' -48.5 NC_004684.1 + 47680 0.72 0.800713
Target:  5'- gCGCC-UUCUugUCGAAGGUGAUGCUGGu -3'
miRNA:   3'- -GUGGcAAGA--AGCUUUUACUGCGGCUg -5'
19078 5' -48.5 NC_004684.1 + 59307 0.72 0.800713
Target:  5'- gGCCGgug-UCGGGgucGAUGGCGCUGGCa -3'
miRNA:   3'- gUGGCaagaAGCUU---UUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 60676 0.72 0.820138
Target:  5'- uCGCCuUUCUUCGGcu-UGcucGCGCCGACg -3'
miRNA:   3'- -GUGGcAAGAAGCUuuuAC---UGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 42214 0.72 0.820138
Target:  5'- gGCCaaccaggUCGGAGAUGGCGUCGGCa -3'
miRNA:   3'- gUGGcaaga--AGCUUUUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 30614 0.72 0.829542
Target:  5'- gGgCGUUCUUCGAggGAGUGAC-CgCGACg -3'
miRNA:   3'- gUgGCAAGAAGCU--UUUACUGcG-GCUG- -5'
19078 5' -48.5 NC_004684.1 + 14347 0.71 0.881003
Target:  5'- cCACCGUgCUgggcaccgCGcAGGUGuACGCCGACu -3'
miRNA:   3'- -GUGGCAaGAa-------GCuUUUAC-UGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 9278 0.71 0.881003
Target:  5'- gGCCGaug-UCGAGuucccGACGCCGACg -3'
miRNA:   3'- gUGGCaagaAGCUUuua--CUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 55742 0.69 0.928725
Target:  5'- cCGCCGUgCUggCGugGccGAUGCCGACg -3'
miRNA:   3'- -GUGGCAaGAa-GCuuUuaCUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 43028 0.69 0.934381
Target:  5'- uCGCCGacCUUggUGAugGUGGCGUCGACc -3'
miRNA:   3'- -GUGGCaaGAA--GCUuuUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 46539 0.69 0.944816
Target:  5'- gCACCGg---UCGGAAGaacGACGCCGGu -3'
miRNA:   3'- -GUGGCaagaAGCUUUUa--CUGCGGCUg -5'
19078 5' -48.5 NC_004684.1 + 4204 0.68 0.9496
Target:  5'- gGCCGUUCggccgcgUCGAGuc-GAC-CCGGCg -3'
miRNA:   3'- gUGGCAAGa------AGCUUuuaCUGcGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 25519 0.68 0.954099
Target:  5'- gGCUGUUC-UCGAccgccGACGCCGGg -3'
miRNA:   3'- gUGGCAAGaAGCUuuua-CUGCGGCUg -5'
19078 5' -48.5 NC_004684.1 + 25251 0.68 0.95832
Target:  5'- gGCCGUg---CGu-GGUGGCGUCGGCg -3'
miRNA:   3'- gUGGCAagaaGCuuUUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 5672 0.68 0.962266
Target:  5'- aGCCGUgg-UCGGAGGUGGCcggggcCCGGCc -3'
miRNA:   3'- gUGGCAagaAGCUUUUACUGc-----GGCUG- -5'
19078 5' -48.5 NC_004684.1 + 33547 0.68 0.965945
Target:  5'- gCACCGUcCUgUUGAGGcgcGGCGUCGACa -3'
miRNA:   3'- -GUGGCAaGA-AGCUUUua-CUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 26634 0.68 0.965945
Target:  5'- aCACCGUcggcgcggaguUCUUCGggGugucgGAggUGCCGAUc -3'
miRNA:   3'- -GUGGCA-----------AGAAGCuuUua---CU--GCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.