Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19078 | 5' | -48.5 | NC_004684.1 | + | 4204 | 0.68 | 0.9496 |
Target: 5'- gGCCGUUCggccgcgUCGAGuc-GAC-CCGGCg -3' miRNA: 3'- gUGGCAAGa------AGCUUuuaCUGcGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 5672 | 0.68 | 0.962266 |
Target: 5'- aGCCGUgg-UCGGAGGUGGCcggggcCCGGCc -3' miRNA: 3'- gUGGCAagaAGCUUUUACUGc-----GGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 6156 | 0.67 | 0.978143 |
Target: 5'- uGCUGUUCaauggCGAGGuguggcUGAuCGCCGACg -3' miRNA: 3'- gUGGCAAGaa---GCUUUu-----ACU-GCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 9278 | 0.71 | 0.881003 |
Target: 5'- gGCCGaug-UCGAGuucccGACGCCGACg -3' miRNA: 3'- gUGGCaagaAGCUUuua--CUGCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 9373 | 0.66 | 0.982859 |
Target: 5'- aGCCGgaCacCGAGGAcGACGCCGGu -3' miRNA: 3'- gUGGCaaGaaGCUUUUaCUGCGGCUg -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 13500 | 0.67 | 0.97253 |
Target: 5'- cCGCCGUcaaggagugCaUCGAAAucccGUG-CGCCGACg -3' miRNA: 3'- -GUGGCAa--------GaAGCUUU----UACuGCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 13838 | 0.66 | 0.984908 |
Target: 5'- gCGCCGUcgugguUCUcCGAGGucauccGCGCCGACc -3' miRNA: 3'- -GUGGCA------AGAaGCUUUuac---UGCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 14347 | 0.71 | 0.881003 |
Target: 5'- cCACCGUgCUgggcaccgCGcAGGUGuACGCCGACu -3' miRNA: 3'- -GUGGCAaGAa-------GCuUUUAC-UGCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 16103 | 1.09 | 0.00646 |
Target: 5'- gCACCGUUCUUCGAAAAUGACGCCGACc -3' miRNA: 3'- -GUGGCAAGAAGCUUUUACUGCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 20142 | 0.73 | 0.790713 |
Target: 5'- uGCgGUUCUUCGccGGUGACGgcCCGGCc -3' miRNA: 3'- gUGgCAAGAAGCuuUUACUGC--GGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 23855 | 0.68 | 0.965945 |
Target: 5'- uCACCGU---UCGGAGGUGGCGCa-GCc -3' miRNA: 3'- -GUGGCAagaAGCUUUUACUGCGgcUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 25251 | 0.68 | 0.95832 |
Target: 5'- gGCCGUg---CGu-GGUGGCGUCGGCg -3' miRNA: 3'- gUGGCAagaaGCuuUUACUGCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 25519 | 0.68 | 0.954099 |
Target: 5'- gGCUGUUC-UCGAccgccGACGCCGGg -3' miRNA: 3'- gUGGCAAGaAGCUuuua-CUGCGGCUg -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 26634 | 0.68 | 0.965945 |
Target: 5'- aCACCGUcggcgcggaguUCUUCGggGugucgGAggUGCCGAUc -3' miRNA: 3'- -GUGGCA-----------AGAAGCuuUua---CU--GCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 28316 | 0.67 | 0.975453 |
Target: 5'- cCACCGgcCUUCauGAucguguUGACGCUGGCc -3' miRNA: 3'- -GUGGCaaGAAG--CUuuu---ACUGCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 30614 | 0.72 | 0.829542 |
Target: 5'- gGgCGUUCUUCGAggGAGUGAC-CgCGACg -3' miRNA: 3'- gUgGCAAGAAGCU--UUUACUGcG-GCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 33547 | 0.68 | 0.965945 |
Target: 5'- gCACCGUcCUgUUGAGGcgcGGCGUCGACa -3' miRNA: 3'- -GUGGCAaGA-AGCUUUua-CUGCGGCUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 40769 | 0.67 | 0.975453 |
Target: 5'- gCGCCGacggugUCgUUGgcGAUGACGCCGcCg -3' miRNA: 3'- -GUGGCa-----AGaAGCuuUUACUGCGGCuG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 41468 | 0.66 | 0.98844 |
Target: 5'- uGCCGaugUUCggCGAGAGcgcgcUGAUGCCgGACa -3' miRNA: 3'- gUGGC---AAGaaGCUUUU-----ACUGCGG-CUG- -5' |
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19078 | 5' | -48.5 | NC_004684.1 | + | 42214 | 0.72 | 0.820138 |
Target: 5'- gGCCaaccaggUCGGAGAUGGCGUCGGCa -3' miRNA: 3'- gUGGcaaga--AGCUUUUACUGCGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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