miRNA display CGI


Results 41 - 60 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 3' -57.2 NC_004684.1 + 48764 0.67 0.575111
Target:  5'- cGCCACGCuggacuugccGACGCcgGGcGGGCCgaugaUGCa -3'
miRNA:   3'- aCGGUGCGuu--------CUGUGa-CC-UCCGG-----ACG- -5'
19079 3' -57.2 NC_004684.1 + 58038 0.67 0.575111
Target:  5'- gGCUccucGCGcCGGGACGCaccGGAGGCCUc- -3'
miRNA:   3'- aCGG----UGC-GUUCUGUGa--CCUCCGGAcg -5'
19079 3' -57.2 NC_004684.1 + 31006 0.67 0.575111
Target:  5'- gGCC-CGCGAGcguGC-CUGGAGGUagacgGCg -3'
miRNA:   3'- aCGGuGCGUUC---UGuGACCUCCGga---CG- -5'
19079 3' -57.2 NC_004684.1 + 5160 0.67 0.575111
Target:  5'- aGCCGCGCuaccccgaugucGAGgugGCGCUGGuuGGCCaggacgGCa -3'
miRNA:   3'- aCGGUGCG------------UUC---UGUGACCu-CCGGa-----CG- -5'
19079 3' -57.2 NC_004684.1 + 63261 0.67 0.575111
Target:  5'- cGCCgauGCGCuccuGGAC-CUGGAGccGCCggGCg -3'
miRNA:   3'- aCGG---UGCGu---UCUGuGACCUC--CGGa-CG- -5'
19079 3' -57.2 NC_004684.1 + 9416 0.67 0.564427
Target:  5'- gGCCAgccuggacagcCGCGAGACgGCcauggUGGAGGCCcugGUg -3'
miRNA:   3'- aCGGU-----------GCGUUCUG-UG-----ACCUCCGGa--CG- -5'
19079 3' -57.2 NC_004684.1 + 63963 0.67 0.564427
Target:  5'- gUGCCGCu---GACugUGGcGGCCaGCg -3'
miRNA:   3'- -ACGGUGcguuCUGugACCuCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 37280 0.67 0.564427
Target:  5'- aGCuCGCGCAGGcguugcuccACACUGcGGGCCcauucgGCg -3'
miRNA:   3'- aCG-GUGCGUUC---------UGUGACcUCCGGa-----CG- -5'
19079 3' -57.2 NC_004684.1 + 54129 0.67 0.564427
Target:  5'- gGCCAC-CAGcGCGCUGGcggucacGGCCUGg -3'
miRNA:   3'- aCGGUGcGUUcUGUGACCu------CCGGACg -5'
19079 3' -57.2 NC_004684.1 + 54435 0.67 0.564427
Target:  5'- cGCCGCGUcggcGGGAgCACcgGGGGuGCCgacgGCg -3'
miRNA:   3'- aCGGUGCG----UUCU-GUGa-CCUC-CGGa---CG- -5'
19079 3' -57.2 NC_004684.1 + 1176 0.67 0.563362
Target:  5'- gUGCCGagcCGC-AGGCGCUGGAcuacuacGGCaaGCg -3'
miRNA:   3'- -ACGGU---GCGuUCUGUGACCU-------CCGgaCG- -5'
19079 3' -57.2 NC_004684.1 + 12037 0.67 0.553797
Target:  5'- gGCCAUGCucGACcaGCaGGAGGCg-GCu -3'
miRNA:   3'- aCGGUGCGuuCUG--UGaCCUCCGgaCG- -5'
19079 3' -57.2 NC_004684.1 + 34561 0.67 0.553797
Target:  5'- aGCUACGaGAGcGCGCUGGcGGUgCUGCu -3'
miRNA:   3'- aCGGUGCgUUC-UGUGACCuCCG-GACG- -5'
19079 3' -57.2 NC_004684.1 + 36087 0.68 0.543227
Target:  5'- aGCCGCgaugggagGCAAGcGCGCggugGGuGcGCCUGCu -3'
miRNA:   3'- aCGGUG--------CGUUC-UGUGa---CCuC-CGGACG- -5'
19079 3' -57.2 NC_004684.1 + 40341 0.68 0.543227
Target:  5'- cGCUggGCAGGuCGCUGGcggcGGCCUugGCc -3'
miRNA:   3'- aCGGugCGUUCuGUGACCu---CCGGA--CG- -5'
19079 3' -57.2 NC_004684.1 + 63690 0.68 0.543227
Target:  5'- gGCCAgCGCGGcGGCGCUGGcGaucuCCUGCc -3'
miRNA:   3'- aCGGU-GCGUU-CUGUGACCuCc---GGACG- -5'
19079 3' -57.2 NC_004684.1 + 28987 0.68 0.532724
Target:  5'- aGCC-UGCGcGAC-CgGGAGGCCUaGCu -3'
miRNA:   3'- aCGGuGCGUuCUGuGaCCUCCGGA-CG- -5'
19079 3' -57.2 NC_004684.1 + 20210 0.68 0.532724
Target:  5'- cGCCGCGCAGcGGCGgccCUGGccGCC-GCu -3'
miRNA:   3'- aCGGUGCGUU-CUGU---GACCucCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 4055 0.68 0.529587
Target:  5'- gGUCACcgGgGAGACcaccucccgguucaACUGGAacGGCCUGCu -3'
miRNA:   3'- aCGGUG--CgUUCUG--------------UGACCU--CCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 1767 0.68 0.522295
Target:  5'- aGCUGCGCGcGugGCUGGAcGCCa-- -3'
miRNA:   3'- aCGGUGCGUuCugUGACCUcCGGacg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.