miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 3' -62.2 NC_004684.1 + 14354 0.74 0.120736
Target:  5'- gCUGgGCACCGCGCAGgUGUaCGCcGAc -3'
miRNA:   3'- gGACgCGUGGCGCGUCgACGcGCG-CU- -5'
19080 3' -62.2 NC_004684.1 + 25215 0.74 0.12397
Target:  5'- aCUGCuCACCGCGCAGUgcgGCGCucuCGAc -3'
miRNA:   3'- gGACGcGUGGCGCGUCGa--CGCGc--GCU- -5'
19080 3' -62.2 NC_004684.1 + 12775 0.74 0.12397
Target:  5'- uCCUcGCGCGCgcacacguacgCGCGCAcGC-GCGCGCGAu -3'
miRNA:   3'- -GGA-CGCGUG-----------GCGCGU-CGaCGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 55701 0.74 0.127285
Target:  5'- gUUGuCGUAgUGCGCAGCUGCuuGCGCGGc -3'
miRNA:   3'- gGAC-GCGUgGCGCGUCGACG--CGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 47858 0.74 0.127285
Target:  5'- cCCgGCGCACC-CGCAGCUG-GCGuUGAg -3'
miRNA:   3'- -GGaCGCGUGGcGCGUCGACgCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 51562 0.74 0.130681
Target:  5'- cUCUGCGcCAgUGCGC-GCUGCGCgGCGGc -3'
miRNA:   3'- -GGACGC-GUgGCGCGuCGACGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 2539 0.74 0.130681
Target:  5'- gCUGCgGCACCuGCGUGGa-GCGCGCGGa -3'
miRNA:   3'- gGACG-CGUGG-CGCGUCgaCGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 8176 0.73 0.137366
Target:  5'- gCCggggGCGCGCUgggccagGCGCAGCUGaucaaGCGCGu -3'
miRNA:   3'- -GGa---CGCGUGG-------CGCGUCGACg----CGCGCu -5'
19080 3' -62.2 NC_004684.1 + 37134 0.73 0.137726
Target:  5'- gCCaGCGCACUGCGCcgccaguucuGGgaGCGCGcCGAg -3'
miRNA:   3'- -GGaCGCGUGGCGCG----------UCgaCGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 46098 0.73 0.137726
Target:  5'- gCCUGCGUugCGCagauaCGGCcggGCGCGCGu -3'
miRNA:   3'- -GGACGCGugGCGc----GUCGa--CGCGCGCu -5'
19080 3' -62.2 NC_004684.1 + 4391 0.73 0.141378
Target:  5'- uCCUGCGCAUCGCGUucccggccaccGGCcacGUGCGCa- -3'
miRNA:   3'- -GGACGCGUGGCGCG-----------UCGa--CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 13629 0.73 0.141378
Target:  5'- uCCUGCGCacguucgccGCCGCGCAcCUGCGUGg-- -3'
miRNA:   3'- -GGACGCG---------UGGCGCGUcGACGCGCgcu -5'
19080 3' -62.2 NC_004684.1 + 65422 0.73 0.152871
Target:  5'- --cGCGCGCCagGCGCuGCgcugGCGUGCGGc -3'
miRNA:   3'- ggaCGCGUGG--CGCGuCGa---CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 20618 0.72 0.156887
Target:  5'- aCCUGgGCACCG-GCgAGCgccaGCGCGuCGAg -3'
miRNA:   3'- -GGACgCGUGGCgCG-UCGa---CGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 1008 0.72 0.156887
Target:  5'- -gUGCGgagauuucCACCGCGCAGCUcGCgGCGUGGg -3'
miRNA:   3'- ggACGC--------GUGGCGCGUCGA-CG-CGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 5777 0.72 0.156887
Target:  5'- --gGCGCAgCGCGCuacuGCgccagGCGUGCGAg -3'
miRNA:   3'- ggaCGCGUgGCGCGu---CGa----CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 45153 0.72 0.156887
Target:  5'- gCCUGCGCguugAUCGCGCGGgUGCcgucGCGCa- -3'
miRNA:   3'- -GGACGCG----UGGCGCGUCgACG----CGCGcu -5'
19080 3' -62.2 NC_004684.1 + 12896 0.72 0.160997
Target:  5'- gCCUGCGCucGCCGCcaGCGGUgccgGUGCGCc- -3'
miRNA:   3'- -GGACGCG--UGGCG--CGUCGa---CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 5241 0.72 0.165205
Target:  5'- cCCUGCGCaagGCCGgGCacGGCgagGCGUGCa- -3'
miRNA:   3'- -GGACGCG---UGGCgCG--UCGa--CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 45644 0.72 0.173917
Target:  5'- --gGCGCAgCGCGCGGCcgaccaucUGCGCGUa- -3'
miRNA:   3'- ggaCGCGUgGCGCGUCG--------ACGCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.