miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 3' -62.2 NC_004684.1 + 15074 1.09 0.000265
Target:  5'- gCCUGCGCACCGCGCAGCUGCGCGCGAu -3'
miRNA:   3'- -GGACGCGUGGCGCGUCGACGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 58073 0.84 0.023363
Target:  5'- aCCgUGCGCACCGUGCAGCUcgaccgggaGCGCGcCGAg -3'
miRNA:   3'- -GG-ACGCGUGGCGCGUCGA---------CGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 1957 0.8 0.043046
Target:  5'- gCC-GCGCGCCgcacgccaGCGCAGCgccugGCGCGCGAa -3'
miRNA:   3'- -GGaCGCGUGG--------CGCGUCGa----CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 30122 0.8 0.043046
Target:  5'- gCCUGCGCgagcuacaggcACCGCGCAGUgUGCGCGuCGGc -3'
miRNA:   3'- -GGACGCG-----------UGGCGCGUCG-ACGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 6375 0.79 0.053659
Target:  5'- gCCUGCGCGuuGCGCAGC-GUGUugGCGAa -3'
miRNA:   3'- -GGACGCGUggCGCGUCGaCGCG--CGCU- -5'
19080 3' -62.2 NC_004684.1 + 26568 0.78 0.058262
Target:  5'- uCCgGCGCGCCcuggcGCGCGGCggUGUGCGCGGg -3'
miRNA:   3'- -GGaCGCGUGG-----CGCGUCG--ACGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 63161 0.78 0.059879
Target:  5'- uCCUGCGCGCCGCGCAGgcgcaUGCaGuCGUGGc -3'
miRNA:   3'- -GGACGCGUGGCGCGUCg----ACG-C-GCGCU- -5'
19080 3' -62.2 NC_004684.1 + 1510 0.78 0.063246
Target:  5'- aCCUGCGCGCCGCGCucaacGGC-GaCGaCGCGAc -3'
miRNA:   3'- -GGACGCGUGGCGCG-----UCGaC-GC-GCGCU- -5'
19080 3' -62.2 NC_004684.1 + 6801 0.78 0.064998
Target:  5'- gCCUGCGCACCGUGC-GCgGCGUG-GAg -3'
miRNA:   3'- -GGACGCGUGGCGCGuCGaCGCGCgCU- -5'
19080 3' -62.2 NC_004684.1 + 15744 0.78 0.066795
Target:  5'- gCCUcGUGCACgGCcaGCAGCUGCGCaGCGGc -3'
miRNA:   3'- -GGA-CGCGUGgCG--CGUCGACGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 4235 0.77 0.070536
Target:  5'- gCCUGCGCGgCGCGCAGgaGC-CGCa- -3'
miRNA:   3'- -GGACGCGUgGCGCGUCgaCGcGCGcu -5'
19080 3' -62.2 NC_004684.1 + 42900 0.77 0.08079
Target:  5'- cCCUGCgGCACCGCcccgGCGGUaGCGCGCuGAu -3'
miRNA:   3'- -GGACG-CGUGGCG----CGUCGaCGCGCG-CU- -5'
19080 3' -62.2 NC_004684.1 + 52602 0.76 0.085278
Target:  5'- --aGCGCGCCGcCGUAGUUGUGCGCc- -3'
miRNA:   3'- ggaCGCGUGGC-GCGUCGACGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 29668 0.76 0.08761
Target:  5'- uCCUGCGCgcggccgaccagACCGCGCG--UGCGCGCGu -3'
miRNA:   3'- -GGACGCG------------UGGCGCGUcgACGCGCGCu -5'
19080 3' -62.2 NC_004684.1 + 12760 0.76 0.090003
Target:  5'- uCUUG-GC-CCGCGCGGCUGCGCcuGCGGc -3'
miRNA:   3'- -GGACgCGuGGCGCGUCGACGCG--CGCU- -5'
19080 3' -62.2 NC_004684.1 + 15557 0.75 0.097298
Target:  5'- --cGCGCACUgggugaugcuccaGCGCAGC-GCGCGCGGc -3'
miRNA:   3'- ggaCGCGUGG-------------CGCGUCGaCGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 4674 0.75 0.100208
Target:  5'- uCCUGCGUGCCuuGCAGCUcaacccgaacGCGCGCa- -3'
miRNA:   3'- -GGACGCGUGGcgCGUCGA----------CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 63525 0.75 0.105712
Target:  5'- cCUUG-GCACUGCGCAGCgGCGUGCc- -3'
miRNA:   3'- -GGACgCGUGGCGCGUCGaCGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 43650 0.75 0.105712
Target:  5'- aCUGCGCACCGaGCAG-UGCGCcgccaGCGAu -3'
miRNA:   3'- gGACGCGUGGCgCGUCgACGCG-----CGCU- -5'
19080 3' -62.2 NC_004684.1 + 44656 0.74 0.114501
Target:  5'- aCUGCGuCACC-CGCuGCUGCggcgGCGCGAu -3'
miRNA:   3'- gGACGC-GUGGcGCGuCGACG----CGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.