miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 3' -62.2 NC_004684.1 + 59529 0.72 0.173917
Target:  5'- gCCUGCGCacagguccugcACCGC-CAGC-GCGCGCc- -3'
miRNA:   3'- -GGACGCG-----------UGGCGcGUCGaCGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 8176 0.73 0.137366
Target:  5'- gCCggggGCGCGCUgggccagGCGCAGCUGaucaaGCGCGu -3'
miRNA:   3'- -GGa---CGCGUGG-------CGCGUCGACg----CGCGCu -5'
19080 3' -62.2 NC_004684.1 + 37134 0.73 0.137726
Target:  5'- gCCaGCGCACUGCGCcgccaguucuGGgaGCGCGcCGAg -3'
miRNA:   3'- -GGaCGCGUGGCGCG----------UCgaCGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 13629 0.73 0.141378
Target:  5'- uCCUGCGCacguucgccGCCGCGCAcCUGCGUGg-- -3'
miRNA:   3'- -GGACGCG---------UGGCGCGUcGACGCGCgcu -5'
19080 3' -62.2 NC_004684.1 + 65422 0.73 0.152871
Target:  5'- --cGCGCGCCagGCGCuGCgcugGCGUGCGGc -3'
miRNA:   3'- ggaCGCGUGG--CGCGuCGa---CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 20618 0.72 0.156887
Target:  5'- aCCUGgGCACCG-GCgAGCgccaGCGCGuCGAg -3'
miRNA:   3'- -GGACgCGUGGCgCG-UCGa---CGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 1008 0.72 0.156887
Target:  5'- -gUGCGgagauuucCACCGCGCAGCUcGCgGCGUGGg -3'
miRNA:   3'- ggACGC--------GUGGCGCGUCGA-CG-CGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 5777 0.72 0.156887
Target:  5'- --gGCGCAgCGCGCuacuGCgccagGCGUGCGAg -3'
miRNA:   3'- ggaCGCGUgGCGCGu---CGa----CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 12896 0.72 0.160997
Target:  5'- gCCUGCGCucGCCGCcaGCGGUgccgGUGCGCc- -3'
miRNA:   3'- -GGACGCG--UGGCG--CGUCGa---CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 51562 0.74 0.130681
Target:  5'- cUCUGCGcCAgUGCGC-GCUGCGCgGCGGc -3'
miRNA:   3'- -GGACGC-GUgGCGCGuCGACGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 2539 0.74 0.130681
Target:  5'- gCUGCgGCACCuGCGUGGa-GCGCGCGGa -3'
miRNA:   3'- gGACG-CGUGG-CGCGUCgaCGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 44656 0.74 0.114501
Target:  5'- aCUGCGuCACC-CGCuGCUGCggcgGCGCGAu -3'
miRNA:   3'- gGACGC-GUGGcGCGuCGACG----CGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 30122 0.8 0.043046
Target:  5'- gCCUGCGCgagcuacaggcACCGCGCAGUgUGCGCGuCGGc -3'
miRNA:   3'- -GGACGCG-----------UGGCGCGUCG-ACGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 6375 0.79 0.053659
Target:  5'- gCCUGCGCGuuGCGCAGC-GUGUugGCGAa -3'
miRNA:   3'- -GGACGCGUggCGCGUCGaCGCG--CGCU- -5'
19080 3' -62.2 NC_004684.1 + 26568 0.78 0.058262
Target:  5'- uCCgGCGCGCCcuggcGCGCGGCggUGUGCGCGGg -3'
miRNA:   3'- -GGaCGCGUGG-----CGCGUCG--ACGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 15744 0.78 0.066795
Target:  5'- gCCUcGUGCACgGCcaGCAGCUGCGCaGCGGc -3'
miRNA:   3'- -GGA-CGCGUGgCG--CGUCGACGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 4235 0.77 0.070536
Target:  5'- gCCUGCGCGgCGCGCAGgaGC-CGCa- -3'
miRNA:   3'- -GGACGCGUgGCGCGUCgaCGcGCGcu -5'
19080 3' -62.2 NC_004684.1 + 29668 0.76 0.08761
Target:  5'- uCCUGCGCgcggccgaccagACCGCGCG--UGCGCGCGu -3'
miRNA:   3'- -GGACGCG------------UGGCGCGUcgACGCGCGCu -5'
19080 3' -62.2 NC_004684.1 + 12760 0.76 0.090003
Target:  5'- uCUUG-GC-CCGCGCGGCUGCGCcuGCGGc -3'
miRNA:   3'- -GGACgCGuGGCGCGUCGACGCG--CGCU- -5'
19080 3' -62.2 NC_004684.1 + 4674 0.75 0.100208
Target:  5'- uCCUGCGUGCCuuGCAGCUcaacccgaacGCGCGCa- -3'
miRNA:   3'- -GGACGCGUGGcgCGUCGA----------CGCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.