miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 3' -62.2 NC_004684.1 + 1008 0.72 0.156887
Target:  5'- -gUGCGgagauuucCACCGCGCAGCUcGCgGCGUGGg -3'
miRNA:   3'- ggACGC--------GUGGCGCGUCGA-CG-CGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 1510 0.78 0.063246
Target:  5'- aCCUGCGCGCCGCGCucaacGGC-GaCGaCGCGAc -3'
miRNA:   3'- -GGACGCGUGGCGCG-----UCGaC-GC-GCGCU- -5'
19080 3' -62.2 NC_004684.1 + 1617 0.67 0.351657
Target:  5'- gCCgUGCGCGCgcccaccggCGCGCGGCggccaacGCcCGCGAg -3'
miRNA:   3'- -GG-ACGCGUG---------GCGCGUCGa------CGcGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 1722 0.66 0.404116
Target:  5'- gCCUGCugGCgcaggccuacucgggACCGgGUaggucgggaccggAGCUGCGCGCGu -3'
miRNA:   3'- -GGACG--CG---------------UGGCgCG-------------UCGACGCGCGCu -5'
19080 3' -62.2 NC_004684.1 + 1957 0.8 0.043046
Target:  5'- gCC-GCGCGCCgcacgccaGCGCAGCgccugGCGCGCGAa -3'
miRNA:   3'- -GGaCGCGUGG--------CGCGUCGa----CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 2080 0.66 0.404987
Target:  5'- --aGCGCGCCagcucgcaacuggugGCGCAGCacuacgGCGCgGCGu -3'
miRNA:   3'- ggaCGCGUGG---------------CGCGUCGa-----CGCG-CGCu -5'
19080 3' -62.2 NC_004684.1 + 2539 0.74 0.130681
Target:  5'- gCUGCgGCACCuGCGUGGa-GCGCGCGGa -3'
miRNA:   3'- gGACG-CGUGG-CGCGUCgaCGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 2739 0.69 0.285437
Target:  5'- gCUGCGCGCCGacauCGCGG-UGCGCcaCGAc -3'
miRNA:   3'- gGACGCGUGGC----GCGUCgACGCGc-GCU- -5'
19080 3' -62.2 NC_004684.1 + 3076 0.66 0.437142
Target:  5'- aCCUgGCGguguucaacCACCacgacggccaggGCGCA-CUGCGCGCGGu -3'
miRNA:   3'- -GGA-CGC---------GUGG------------CGCGUcGACGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 3163 0.68 0.30564
Target:  5'- uCCUGCGCcugaugggaugcaACCugucGUGUAGCUG-GUGCGAc -3'
miRNA:   3'- -GGACGCG-------------UGG----CGCGUCGACgCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 3276 0.66 0.431681
Target:  5'- aCCaUGCGCACCgaguucgaggccaugGCaCAGCgcgaGCGCGaCGAc -3'
miRNA:   3'- -GG-ACGCGUGG---------------CGcGUCGa---CGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 3896 0.7 0.223289
Target:  5'- cCCUGCugGCGCagGCGCAGCUGgaggccuCGCGCc- -3'
miRNA:   3'- -GGACG--CGUGg-CGCGUCGAC-------GCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 4235 0.77 0.070536
Target:  5'- gCCUGCGCGgCGCGCAGgaGC-CGCa- -3'
miRNA:   3'- -GGACGCGUgGCGCGUCgaCGcGCGcu -5'
19080 3' -62.2 NC_004684.1 + 4391 0.73 0.141378
Target:  5'- uCCUGCGCAUCGCGUucccggccaccGGCcacGUGCGCa- -3'
miRNA:   3'- -GGACGCGUGGCGCG-----------UCGa--CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 4435 0.72 0.17797
Target:  5'- --cGCGgGCCugcugGCGCAGCuggaggccgcacgUGCGCGCGAg -3'
miRNA:   3'- ggaCGCgUGG-----CGCGUCG-------------ACGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 4674 0.75 0.100208
Target:  5'- uCCUGCGUGCCuuGCAGCUcaacccgaacGCGCGCa- -3'
miRNA:   3'- -GGACGCGUGGcgCGUCGA----------CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 4977 0.68 0.313586
Target:  5'- aCUGCGCACC-UGgGGCa--GCGCGAg -3'
miRNA:   3'- gGACGCGUGGcGCgUCGacgCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 5020 0.67 0.385241
Target:  5'- uCCUGaUGgACCGCGacgacgaggugcgcaGGCUgGCGCGCGc -3'
miRNA:   3'- -GGAC-GCgUGGCGCg--------------UCGA-CGCGCGCu -5'
19080 3' -62.2 NC_004684.1 + 5241 0.72 0.165205
Target:  5'- cCCUGCGCaagGCCGgGCacGGCgagGCGUGCa- -3'
miRNA:   3'- -GGACGCG---UGGCgCG--UCGa--CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 5317 0.66 0.401508
Target:  5'- --cGCGCuggcgACCGUGCAGCaGUGgGUGGc -3'
miRNA:   3'- ggaCGCG-----UGGCGCGUCGaCGCgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.