miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 3' -62.2 NC_004684.1 + 47188 0.66 0.419095
Target:  5'- gCC-GC-CGCUGCGCGGCgaacgGUGCgGCGGu -3'
miRNA:   3'- -GGaCGcGUGGCGCGUCGa----CGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 2080 0.66 0.404987
Target:  5'- --aGCGCGCCagcucgcaacuggugGCGCAGCacuacgGCGCgGCGu -3'
miRNA:   3'- ggaCGCGUGG---------------CGCGUCGa-----CGCG-CGCu -5'
19080 3' -62.2 NC_004684.1 + 41148 0.66 0.410242
Target:  5'- cUCUGgGguaCGCCGCGcCGGacccGCGCGCGGg -3'
miRNA:   3'- -GGACgC---GUGGCGC-GUCga--CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 35778 0.66 0.392892
Target:  5'- --cGCGCGCCGCGCuccaucGUgGCGCaguccccgGCGAc -3'
miRNA:   3'- ggaCGCGUGGCGCGu-----CGaCGCG--------CGCU- -5'
19080 3' -62.2 NC_004684.1 + 45022 0.66 0.410242
Target:  5'- -aUGCcgucgGCACCGaCGaugccgaGGUUGUGCGCGAa -3'
miRNA:   3'- ggACG-----CGUGGC-GCg------UCGACGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 14995 0.66 0.428062
Target:  5'- aCCUGCGC-CUGCGCgAGCagGUcauggucgaGCGgGAg -3'
miRNA:   3'- -GGACGCGuGGCGCG-UCGa-CG---------CGCgCU- -5'
19080 3' -62.2 NC_004684.1 + 31852 0.66 0.410242
Target:  5'- gCCUGUaugaGaCGCCGUGCgAGCUGCcCGCcGAc -3'
miRNA:   3'- -GGACG----C-GUGGCGCG-UCGACGcGCG-CU- -5'
19080 3' -62.2 NC_004684.1 + 10568 0.66 0.437141
Target:  5'- cCCUgGCGUuccCCGCcgaucCGGCUgguucgGCGCGCGAg -3'
miRNA:   3'- -GGA-CGCGu--GGCGc----GUCGA------CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 17398 0.66 0.428062
Target:  5'- aCCgGUGCAUuugaCGaUGCGGC-GCGCGUGAa -3'
miRNA:   3'- -GGaCGCGUG----GC-GCGUCGaCGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 17486 0.66 0.410242
Target:  5'- aCCUgGUGCaggaGCUGauuaCGCAGCUGCgcgaGCGCGGu -3'
miRNA:   3'- -GGA-CGCG----UGGC----GCGUCGACG----CGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 13524 0.66 0.410242
Target:  5'- uCCcGUGCGCCGacgaguucgaGgAGCUGCGCcugGCGGc -3'
miRNA:   3'- -GGaCGCGUGGCg---------CgUCGACGCG---CGCU- -5'
19080 3' -62.2 NC_004684.1 + 57550 0.66 0.392892
Target:  5'- --aGCGCgACCGCcgAGCUGCGC-CGGu -3'
miRNA:   3'- ggaCGCG-UGGCGcgUCGACGCGcGCU- -5'
19080 3' -62.2 NC_004684.1 + 11820 0.66 0.392892
Target:  5'- gCgaGCGCGCCGCuguccgGCGaCUG-GCGCGAc -3'
miRNA:   3'- -GgaCGCGUGGCG------CGUcGACgCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 9619 0.66 0.401508
Target:  5'- --aGCGCGCCGUGCAG--GCGC-UGAa -3'
miRNA:   3'- ggaCGCGUGGCGCGUCgaCGCGcGCU- -5'
19080 3' -62.2 NC_004684.1 + 9650 0.66 0.401508
Target:  5'- uCCcG-GCAuCCGgGCGGCggugaaGCGCGCGGu -3'
miRNA:   3'- -GGaCgCGU-GGCgCGUCGa-----CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 38956 0.66 0.419095
Target:  5'- aCCgGCaccaaGCACCGCaccgaGguGUUcGCGCGCGGg -3'
miRNA:   3'- -GGaCG-----CGUGGCG-----CguCGA-CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 43276 0.66 0.410242
Target:  5'- gCC-GCGCACCaCGUccuuGGCgaUGcCGCGCGAg -3'
miRNA:   3'- -GGaCGCGUGGcGCG----UCG--AC-GCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 27837 0.66 0.410242
Target:  5'- uCCUGCuggGCACCGaGCGcGCUGUGCacGCa- -3'
miRNA:   3'- -GGACG---CGUGGCgCGU-CGACGCG--CGcu -5'
19080 3' -62.2 NC_004684.1 + 13788 0.66 0.401508
Target:  5'- aCCUGCGCcuCCaGCGCGGUgucGCcCGCa- -3'
miRNA:   3'- -GGACGCGu-GG-CGCGUCGa--CGcGCGcu -5'
19080 3' -62.2 NC_004684.1 + 67054 0.66 0.419095
Target:  5'- gCUGCGCACgcuuCGCGCcGUacccggUGCGgGCGu -3'
miRNA:   3'- gGACGCGUG----GCGCGuCG------ACGCgCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.