miRNA display CGI


Results 41 - 60 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 5' -53.2 NC_004684.1 + 39180 0.68 0.714214
Target:  5'- gGCCAgguagcGCAGGCUGGcgGUgcugUCCACGuGCGc -3'
miRNA:   3'- aCGGU------CGUUCGACCa-CA----AGGUGU-UGC- -5'
19080 5' -53.2 NC_004684.1 + 37203 0.68 0.714214
Target:  5'- gGCCAGCu-GCUGGUGUgcgugagCUAUuuCGc -3'
miRNA:   3'- aCGGUCGuuCGACCACAa------GGUGuuGC- -5'
19080 5' -53.2 NC_004684.1 + 16477 0.68 0.714214
Target:  5'- cUGUgGGCAGGC-GGUGUugUUUACAGCa -3'
miRNA:   3'- -ACGgUCGUUCGaCCACA--AGGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 33712 0.68 0.70332
Target:  5'- gUGuCCAGCGcGgUGGUGgUgCACAGCGa -3'
miRNA:   3'- -AC-GGUCGUuCgACCACaAgGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 23726 0.69 0.692354
Target:  5'- cGCCGuGUggGCUGa-GUUCCAgGACGu -3'
miRNA:   3'- aCGGU-CGuuCGACcaCAAGGUgUUGC- -5'
19080 5' -53.2 NC_004684.1 + 12908 0.69 0.692354
Target:  5'- cGCCAGCGGuGCcGGUGcgCCGuCGGCc -3'
miRNA:   3'- aCGGUCGUU-CGaCCACaaGGU-GUUGc -5'
19080 5' -53.2 NC_004684.1 + 43997 0.69 0.681329
Target:  5'- gGCCAGCugcGUUGGccagGUcaUCCACGACc -3'
miRNA:   3'- aCGGUCGuu-CGACCa---CA--AGGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 16970 0.69 0.681329
Target:  5'- gGCCuGCAccugcuGCUGGUGUaCCcCAACa -3'
miRNA:   3'- aCGGuCGUu-----CGACCACAaGGuGUUGc -5'
19080 5' -53.2 NC_004684.1 + 29121 0.69 0.67469
Target:  5'- cGCCAgaccagcacguGCGAGCUGGUGgugCCgacgcaguucgccgcGCAGCa -3'
miRNA:   3'- aCGGU-----------CGUUCGACCACaa-GG---------------UGUUGc -5'
19080 5' -53.2 NC_004684.1 + 11723 0.69 0.670255
Target:  5'- gGuCCAGC-AGCUGGUGcgCCGCcaGGCc -3'
miRNA:   3'- aC-GGUCGuUCGACCACaaGGUG--UUGc -5'
19080 5' -53.2 NC_004684.1 + 60463 0.69 0.648008
Target:  5'- gGCCAGCAuGCcGGgcaGUUCCucggGCAACa -3'
miRNA:   3'- aCGGUCGUuCGaCCa--CAAGG----UGUUGc -5'
19080 5' -53.2 NC_004684.1 + 51914 0.69 0.648008
Target:  5'- gGCgaaCGGguGGCUGGUGgUCCACucGACGc -3'
miRNA:   3'- aCG---GUCguUCGACCACaAGGUG--UUGC- -5'
19080 5' -53.2 NC_004684.1 + 15173 0.69 0.648008
Target:  5'- cGCCAcGCAccugGGaCUGGUGcUgCGCAGCGg -3'
miRNA:   3'- aCGGU-CGU----UC-GACCACaAgGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 39122 0.7 0.624586
Target:  5'- cGCCAGCGgccucgcgcaccaGGCUGGccgGgUCCACcGCGc -3'
miRNA:   3'- aCGGUCGU-------------UCGACCa--CaAGGUGuUGC- -5'
19080 5' -53.2 NC_004684.1 + 48957 0.7 0.603418
Target:  5'- cGUCGGCGGGCggGGUGg-CCGgGGCGg -3'
miRNA:   3'- aCGGUCGUUCGa-CCACaaGGUgUUGC- -5'
19080 5' -53.2 NC_004684.1 + 9549 0.7 0.603418
Target:  5'- cGCCGGUugGAGCcGGUGcgCCGCGAa- -3'
miRNA:   3'- aCGGUCG--UUCGaCCACaaGGUGUUgc -5'
19080 5' -53.2 NC_004684.1 + 30500 0.71 0.570205
Target:  5'- gGCCAGUccGAGCUGGUugccgaCCACGGCc -3'
miRNA:   3'- aCGGUCG--UUCGACCAcaa---GGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 11375 0.71 0.559226
Target:  5'- gGCCAGC-AGCgUGGUGgUgCGCGACu -3'
miRNA:   3'- aCGGUCGuUCG-ACCACaAgGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 55813 0.71 0.552667
Target:  5'- -aCCGGCGGGCUGGUGUggaacucgcgguagCCGCugugguuGCGg -3'
miRNA:   3'- acGGUCGUUCGACCACAa-------------GGUGu------UGC- -5'
19080 5' -53.2 NC_004684.1 + 45346 0.71 0.548307
Target:  5'- gUGCCuGGC--GCUGGcUGUUCCGCAugucGCGg -3'
miRNA:   3'- -ACGG-UCGuuCGACC-ACAAGGUGU----UGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.