miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 3' -60.1 NC_004684.1 + 9894 0.66 0.5264
Target:  5'- aGCAGgcCGCCgACGAGUGguccgGGCugaccGAGGCg -3'
miRNA:   3'- -UGUC--GCGGaUGCUCGCa----CCG-----CUCCGg -5'
19083 3' -60.1 NC_004684.1 + 40315 0.66 0.5264
Target:  5'- gGCGGCgauguccacGCCUGCGgacccGGCGcUGGagauGAGGCUg -3'
miRNA:   3'- -UGUCG---------CGGAUGC-----UCGC-ACCg---CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 3337 0.66 0.506287
Target:  5'- -aGGCGCUcaACGAG-GUGuuCGAGGCCg -3'
miRNA:   3'- ugUCGCGGa-UGCUCgCACc-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 49772 0.66 0.48651
Target:  5'- -gAGCGCCagUACGGGUuc--CGAGGCCg -3'
miRNA:   3'- ugUCGCGG--AUGCUCGcaccGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 27714 0.66 0.53657
Target:  5'- uCGGCgGCCgagcGCGAGCacgaGGCacgcgGAGGCCg -3'
miRNA:   3'- uGUCG-CGGa---UGCUCGca--CCG-----CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 18097 0.66 0.496354
Target:  5'- gACGGCaagGCCacCGAGC---GCGAGGCCg -3'
miRNA:   3'- -UGUCG---CGGauGCUCGcacCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 32921 0.66 0.516304
Target:  5'- gGCGGUGCCggacCGGGUGccucgGGCaggauGGGCCg -3'
miRNA:   3'- -UGUCGCGGau--GCUCGCa----CCGc----UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 61354 0.66 0.516304
Target:  5'- aGCuGgGCC-GCGAgGCGcUGGCGgccuaaAGGCCa -3'
miRNA:   3'- -UGuCgCGGaUGCU-CGC-ACCGC------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 44782 0.66 0.48651
Target:  5'- cACAGCGCCguaACG-GCcucacCGAGGCCu -3'
miRNA:   3'- -UGUCGCGGa--UGCuCGcacc-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 65433 0.66 0.48651
Target:  5'- cGCuGCGCUgGCGuGCG-GcGCGcGGCCa -3'
miRNA:   3'- -UGuCGCGGaUGCuCGCaC-CGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 19774 0.66 0.496354
Target:  5'- cCGGUGCCcGCcggGGGCGacaagaUGGCG-GGCCu -3'
miRNA:   3'- uGUCGCGGaUG---CUCGC------ACCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 10792 0.66 0.516304
Target:  5'- gACGGCGUCggcacCGuAGCGgcauccGGCGgcuGGGCCg -3'
miRNA:   3'- -UGUCGCGGau---GC-UCGCa-----CCGC---UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 67067 0.66 0.496354
Target:  5'- --cGCGCCguacccggUGCGGGCGuUGGCcucGGcGGCCa -3'
miRNA:   3'- uguCGCGG--------AUGCUCGC-ACCG---CU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 48950 0.66 0.506287
Target:  5'- aACGGCacGUCgGCGGGCGgggUGGCcGGGGCg -3'
miRNA:   3'- -UGUCG--CGGaUGCUCGC---ACCG-CUCCGg -5'
19083 3' -60.1 NC_004684.1 + 42943 0.66 0.516304
Target:  5'- gACGGCGCUUGUGGcuGCuGUGGUuGuGGCCg -3'
miRNA:   3'- -UGUCGCGGAUGCU--CG-CACCG-CuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 66490 0.66 0.516304
Target:  5'- gGCGGCuagGCCUugGcGGCGgccucGCG-GGCCg -3'
miRNA:   3'- -UGUCG---CGGAugC-UCGCac---CGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 39302 0.66 0.525387
Target:  5'- uGCAGCucGCCUaACGAGCGccccaguUGccGCGcccAGGCCg -3'
miRNA:   3'- -UGUCG--CGGA-UGCUCGC-------AC--CGC---UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 37316 0.66 0.506287
Target:  5'- uCGGCGUCggUGAGUGgccGG-GAGGCCg -3'
miRNA:   3'- uGUCGCGGauGCUCGCa--CCgCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 53884 0.66 0.48553
Target:  5'- uGCGGUGCCUucucgUGGGgGUGGUugugacgGGGGUCa -3'
miRNA:   3'- -UGUCGCGGAu----GCUCgCACCG-------CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 24511 0.67 0.467106
Target:  5'- uCGGUGCCagaggcCGGGCGU-GCGGcGGCCu -3'
miRNA:   3'- uGUCGCGGau----GCUCGCAcCGCU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.