miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 3' -60.1 NC_004684.1 + 49502 0.66 0.5264
Target:  5'- aGCGGCGCgU-CGGGgGUGuaGcGGCCc -3'
miRNA:   3'- -UGUCGCGgAuGCUCgCACcgCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 42943 0.66 0.516304
Target:  5'- gACGGCGCUUGUGGcuGCuGUGGUuGuGGCCg -3'
miRNA:   3'- -UGUCGCGGAUGCU--CG-CACCG-CuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 49772 0.66 0.48651
Target:  5'- -gAGCGCCagUACGGGUuc--CGAGGCCg -3'
miRNA:   3'- ugUCGCGG--AUGCUCGcaccGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 10792 0.66 0.516304
Target:  5'- gACGGCGUCggcacCGuAGCGgcauccGGCGgcuGGGCCg -3'
miRNA:   3'- -UGUCGCGGau---GC-UCGCa-----CCGC---UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 65433 0.66 0.48651
Target:  5'- cGCuGCGCUgGCGuGCG-GcGCGcGGCCa -3'
miRNA:   3'- -UGuCGCGGaUGCuCGCaC-CGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 67067 0.66 0.496354
Target:  5'- --cGCGCCguacccggUGCGGGCGuUGGCcucGGcGGCCa -3'
miRNA:   3'- uguCGCGG--------AUGCUCGC-ACCG---CU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 45214 0.66 0.53657
Target:  5'- gGCAGCGCguccaUGCG-GCGcuUGGUGcuggucAGGCCc -3'
miRNA:   3'- -UGUCGCGg----AUGCuCGC--ACCGC------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 36220 0.66 0.5264
Target:  5'- cGCAGCGuggccaCCgcCGAGacCGcUGGCGuGGCCa -3'
miRNA:   3'- -UGUCGC------GGauGCUC--GC-ACCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 39302 0.66 0.525387
Target:  5'- uGCAGCucGCCUaACGAGCGccccaguUGccGCGcccAGGCCg -3'
miRNA:   3'- -UGUCG--CGGA-UGCUCGC-------AC--CGC---UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 66490 0.66 0.516304
Target:  5'- gGCGGCuagGCCUugGcGGCGgccucGCG-GGCCg -3'
miRNA:   3'- -UGUCG---CGGAugC-UCGCac---CGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 48950 0.66 0.506287
Target:  5'- aACGGCacGUCgGCGGGCGgggUGGCcGGGGCg -3'
miRNA:   3'- -UGUCG--CGGaUGCUCGC---ACCG-CUCCGg -5'
19083 3' -60.1 NC_004684.1 + 53884 0.66 0.48553
Target:  5'- uGCGGUGCCUucucgUGGGgGUGGUugugacgGGGGUCa -3'
miRNA:   3'- -UGUCGCGGAu----GCUCgCACCG-------CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 25575 0.66 0.53657
Target:  5'- cCAGCGCCUccgggugguccACGAagaacgucgGCGUcGGCaccuGGCCg -3'
miRNA:   3'- uGUCGCGGA-----------UGCU---------CGCA-CCGcu--CCGG- -5'
19083 3' -60.1 NC_004684.1 + 43413 0.66 0.5264
Target:  5'- cGCcGcCGCCgaaccCGAgGCccGGCGAGGCCg -3'
miRNA:   3'- -UGuC-GCGGau---GCU-CGcaCCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 4829 0.66 0.53657
Target:  5'- -aAGCucgGCCUGaagcugGAGCGUGGCGcgaacaAGGUCu -3'
miRNA:   3'- ugUCG---CGGAUg-----CUCGCACCGC------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 9894 0.66 0.5264
Target:  5'- aGCAGgcCGCCgACGAGUGguccgGGCugaccGAGGCg -3'
miRNA:   3'- -UGUC--GCGGaUGCUCGCa----CCG-----CUCCGg -5'
19083 3' -60.1 NC_004684.1 + 54514 0.66 0.53657
Target:  5'- uACcGCGCUcaccggcgggggUACGAGCGccGUGAGGaCCg -3'
miRNA:   3'- -UGuCGCGG------------AUGCUCGCacCGCUCC-GG- -5'
19083 3' -60.1 NC_004684.1 + 22703 0.66 0.53657
Target:  5'- gGCGGCGCa---GGaCGUGGCcaAGGCCg -3'
miRNA:   3'- -UGUCGCGgaugCUcGCACCGc-UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 44782 0.66 0.48651
Target:  5'- cACAGCGCCguaACG-GCcucacCGAGGCCu -3'
miRNA:   3'- -UGUCGCGGa--UGCuCGcacc-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 19774 0.66 0.496354
Target:  5'- cCGGUGCCcGCcggGGGCGacaagaUGGCG-GGCCu -3'
miRNA:   3'- uGUCGCGGaUG---CUCGC------ACCGCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.