miRNA display CGI


Results 1 - 20 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 3' -60.1 NC_004684.1 + 339 0.66 0.48651
Target:  5'- uACGGCGCgaaGCGuGCGcagcagcucggUGGCcAGGCCa -3'
miRNA:   3'- -UGUCGCGga-UGCuCGC-----------ACCGcUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 526 0.71 0.264859
Target:  5'- cCGGCGCUgACGugcuggccAGCGcGGuCGAGGCCg -3'
miRNA:   3'- uGUCGCGGaUGC--------UCGCaCC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 956 0.71 0.26746
Target:  5'- cGCGG-GCCUGCGGGUcauUGGCGAcuccggggcguucucGGCCa -3'
miRNA:   3'- -UGUCgCGGAUGCUCGc--ACCGCU---------------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 1642 0.68 0.419535
Target:  5'- gGCGGCcaacGCCcGCGAGgccaacuuCGUGGCGuuuuucgcccaccAGGCCg -3'
miRNA:   3'- -UGUCG----CGGaUGCUC--------GCACCGC-------------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 1698 0.68 0.41773
Target:  5'- -uGGCGCgcauCGAGCGcaagaagcgccugcUGGCGcAGGCCu -3'
miRNA:   3'- ugUCGCGgau-GCUCGC--------------ACCGC-UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 1781 0.71 0.258448
Target:  5'- -gAGCGCgccaacagCUGCGAGaagGGCGAGGUCg -3'
miRNA:   3'- ugUCGCG--------GAUGCUCgcaCCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 2005 0.69 0.351976
Target:  5'- gGCAGCGCCUggguggggguccGCGAugaccgucGCccugGUGGCccugGGGGCCg -3'
miRNA:   3'- -UGUCGCGGA------------UGCU--------CG----CACCG----CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 2104 0.67 0.457555
Target:  5'- cGCAGCa-CUACG-GCGcGGCGuGGUCg -3'
miRNA:   3'- -UGUCGcgGAUGCuCGCaCCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 2541 0.67 0.438773
Target:  5'- uGCGGCaCCUGCgugGAGCGc-GCGgAGGCCu -3'
miRNA:   3'- -UGUCGcGGAUG---CUCGCacCGC-UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 2961 0.67 0.438773
Target:  5'- uCGGCGCgCUgcuguuGCGGGUGgccaacgGGuUGAGGCCa -3'
miRNA:   3'- uGUCGCG-GA------UGCUCGCa------CC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 3147 0.66 0.496354
Target:  5'- --uGCGCCaACacccAGCGccUGGcCGAGGCCa -3'
miRNA:   3'- uguCGCGGaUGc---UCGC--ACC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 3337 0.66 0.506287
Target:  5'- -aGGCGCUcaACGAG-GUGuuCGAGGCCg -3'
miRNA:   3'- ugUCGCGGa-UGCUCgCACc-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 4449 0.69 0.36009
Target:  5'- cGCAGCuggagGCCgcACGuGCGc-GCGAGGCCg -3'
miRNA:   3'- -UGUCG-----CGGa-UGCuCGCacCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 4829 0.66 0.53657
Target:  5'- -aAGCucgGCCUGaagcugGAGCGUGGCGcgaacaAGGUCu -3'
miRNA:   3'- ugUCG---CGGAUg-----CUCGCACCGC------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 5779 0.75 0.151175
Target:  5'- cGCAGCGCgcuaCUGCGccaGGCGU-GCGAGGUCg -3'
miRNA:   3'- -UGUCGCG----GAUGC---UCGCAcCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 6365 0.71 0.278069
Target:  5'- gGCGGCgaugGCCUGCGcguugcgcAGCGUguuGGCGAaguuGGCCg -3'
miRNA:   3'- -UGUCG----CGGAUGC--------UCGCA---CCGCU----CCGG- -5'
19083 3' -60.1 NC_004684.1 + 6834 0.69 0.351976
Target:  5'- -gAGCugGCCUACGGcGCGaagGGCGAcGCCg -3'
miRNA:   3'- ugUCG--CGGAUGCU-CGCa--CCGCUcCGG- -5'
19083 3' -60.1 NC_004684.1 + 7344 0.7 0.313376
Target:  5'- --cGCGCC-ACGAGU---GCGAGGCCu -3'
miRNA:   3'- uguCGCGGaUGCUCGcacCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 7577 0.67 0.476759
Target:  5'- gGCAccGCGCCaUGCuGAGCGacaugcUGGCGGuguucgccuccuGGCCg -3'
miRNA:   3'- -UGU--CGCGG-AUG-CUCGC------ACCGCU------------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 7635 0.76 0.115824
Target:  5'- cCAGCucGCCgugGCGGGCGUGGUGAccgggucggcGGCCu -3'
miRNA:   3'- uGUCG--CGGa--UGCUCGCACCGCU----------CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.