miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 3' -60.1 NC_004684.1 + 52891 0.69 0.32613
Target:  5'- gGCAGCaCCcAgGAGCGUccggccagcacggcGGCGuGGCCg -3'
miRNA:   3'- -UGUCGcGGaUgCUCGCA--------------CCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 64944 0.71 0.271399
Target:  5'- -gAGCGCCUgGCGGGCGgUGGCccgguucAGGUCg -3'
miRNA:   3'- ugUCGCGGA-UGCUCGC-ACCGc------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 47871 0.71 0.274051
Target:  5'- gGCGGUGCCggUGAGCGUcuggaucaggucguaGGC-AGGCCa -3'
miRNA:   3'- -UGUCGCGGauGCUCGCA---------------CCGcUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 25381 0.71 0.278069
Target:  5'- uCAGCGCCUACGccgccGCGcacaGCGGcGGCCa -3'
miRNA:   3'- uGUCGCGGAUGCu----CGCac--CGCU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 48725 0.71 0.278069
Target:  5'- cCAGCGCUUGCcgguGGCGaugUGGC-AGGCCa -3'
miRNA:   3'- uGUCGCGGAUGc---UCGC---ACCGcUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 6365 0.71 0.278069
Target:  5'- gGCGGCgaugGCCUGCGcguugcgcAGCGUguuGGCGAaguuGGCCg -3'
miRNA:   3'- -UGUCG----CGGAUGC--------UCGCA---CCGCU----CCGG- -5'
19083 3' -60.1 NC_004684.1 + 49549 0.7 0.284868
Target:  5'- cGCGGUgGCCgacuuCGGGC-UGGCGuGGCCu -3'
miRNA:   3'- -UGUCG-CGGau---GCUCGcACCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 40357 0.7 0.298146
Target:  5'- gGCGGCgGCCUugGccuugggggccucGGCgGUGGCGgccuucggcAGGCCg -3'
miRNA:   3'- -UGUCG-CGGAugC-------------UCG-CACCGC---------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 20610 0.7 0.313376
Target:  5'- -gAGCGUCUACcuGGGCaccGGCGAGcGCCa -3'
miRNA:   3'- ugUCGCGGAUG--CUCGca-CCGCUC-CGG- -5'
19083 3' -60.1 NC_004684.1 + 956 0.71 0.26746
Target:  5'- cGCGG-GCCUGCGGGUcauUGGCGAcuccggggcguucucGGCCa -3'
miRNA:   3'- -UGUCgCGGAUGCUCGc--ACCGCU---------------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 33477 0.71 0.264859
Target:  5'- gGCGGCGgCUGCG-GUGgacgcGGCGGcGGCCc -3'
miRNA:   3'- -UGUCGCgGAUGCuCGCa----CCGCU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 1781 0.71 0.258448
Target:  5'- -gAGCGCgccaacagCUGCGAGaagGGCGAGGUCg -3'
miRNA:   3'- ugUCGCG--------GAUGCUCgcaCCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 15916 0.77 0.101188
Target:  5'- gGCAGagGCCUACccggcaccgGAGCcUGGCGGGGCCu -3'
miRNA:   3'- -UGUCg-CGGAUG---------CUCGcACCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 63525 0.76 0.128931
Target:  5'- -uGGCGUCgcagcucGCGGGCGUGGCGcucGGCCu -3'
miRNA:   3'- ugUCGCGGa------UGCUCGCACCGCu--CCGG- -5'
19083 3' -60.1 NC_004684.1 + 32420 0.75 0.14724
Target:  5'- aGCAGCGgcaCCU-CGGGCGUGGCGAuGCa -3'
miRNA:   3'- -UGUCGC---GGAuGCUCGCACCGCUcCGg -5'
19083 3' -60.1 NC_004684.1 + 5779 0.75 0.151175
Target:  5'- cGCAGCGCgcuaCUGCGccaGGCGU-GCGAGGUCg -3'
miRNA:   3'- -UGUCGCG----GAUGC---UCGCAcCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 42841 0.74 0.172318
Target:  5'- cACAacuCGCaUACGAGCGcGGUGGGGCCa -3'
miRNA:   3'- -UGUc--GCGgAUGCUCGCaCCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 10200 0.72 0.222613
Target:  5'- cCAGCGCCaGCGAGCGcUGGa-GGuGCCu -3'
miRNA:   3'- uGUCGCGGaUGCUCGC-ACCgcUC-CGG- -5'
19083 3' -60.1 NC_004684.1 + 54366 0.72 0.234064
Target:  5'- gGCaAGUGCCgg-GGGCGgGGuCGAGGCCa -3'
miRNA:   3'- -UG-UCGCGGaugCUCGCaCC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 18011 0.71 0.246005
Target:  5'- gAUGGCGaCUACG-GCGUGGCguugGAGGUCu -3'
miRNA:   3'- -UGUCGCgGAUGCuCGCACCG----CUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.