miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 3' -60.1 NC_004684.1 + 14672 1.11 0.000293
Target:  5'- gACAGCGCCUACGAGCGUGGCGAGGCCg -3'
miRNA:   3'- -UGUCGCGGAUGCUCGCACCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 43744 0.79 0.07089
Target:  5'- cGCAGCGCCUcggcugACGguaccGGCGUGGUcAGGCCg -3'
miRNA:   3'- -UGUCGCGGA------UGC-----UCGCACCGcUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 15916 0.77 0.101188
Target:  5'- gGCAGagGCCUACccggcaccgGAGCcUGGCGGGGCCu -3'
miRNA:   3'- -UGUCg-CGGAUG---------CUCGcACCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 7635 0.76 0.115824
Target:  5'- cCAGCucGCCgugGCGGGCGUGGUGAccgggucggcGGCCu -3'
miRNA:   3'- uGUCG--CGGa--UGCUCGCACCGCU----------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 54778 0.76 0.11866
Target:  5'- cCGGUGCCcgcaaggUGCGcGGCGUGGCG-GGCCu -3'
miRNA:   3'- uGUCGCGG-------AUGC-UCGCACCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 24994 0.76 0.125531
Target:  5'- uCGGCGCgUugGGGUc-GGCGGGGCCg -3'
miRNA:   3'- uGUCGCGgAugCUCGcaCCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 17798 0.76 0.126881
Target:  5'- aACGaCGCCUGCGGGUGUgaggucuggaccgcaGGCGAaGGCCa -3'
miRNA:   3'- -UGUcGCGGAUGCUCGCA---------------CCGCU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 63525 0.76 0.128931
Target:  5'- -uGGCGUCgcagcucGCGGGCGUGGCGcucGGCCu -3'
miRNA:   3'- ugUCGCGGa------UGCUCGCACCGCu--CCGG- -5'
19083 3' -60.1 NC_004684.1 + 31258 0.75 0.14724
Target:  5'- cACuGCGCCcccACaGGUGUGGCGAaGGCCa -3'
miRNA:   3'- -UGuCGCGGa--UGcUCGCACCGCU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 32420 0.75 0.14724
Target:  5'- aGCAGCGgcaCCU-CGGGCGUGGCGAuGCa -3'
miRNA:   3'- -UGUCGC---GGAuGCUCGCACCGCUcCGg -5'
19083 3' -60.1 NC_004684.1 + 5779 0.75 0.151175
Target:  5'- cGCAGCGCgcuaCUGCGccaGGCGU-GCGAGGUCg -3'
miRNA:   3'- -UGUCGCG----GAUGC---UCGCAcCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 42841 0.74 0.172318
Target:  5'- cACAacuCGCaUACGAGCGcGGUGGGGCCa -3'
miRNA:   3'- -UGUc--GCGgAUGCUCGCaCCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 10222 0.72 0.222613
Target:  5'- --uGCGCC--CGAGCGUGcGCGucGGCCa -3'
miRNA:   3'- uguCGCGGauGCUCGCAC-CGCu-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 10200 0.72 0.222613
Target:  5'- cCAGCGCCaGCGAGCGcUGGa-GGuGCCu -3'
miRNA:   3'- uGUCGCGGaUGCUCGC-ACCgcUC-CGG- -5'
19083 3' -60.1 NC_004684.1 + 54366 0.72 0.234064
Target:  5'- gGCaAGUGCCgg-GGGCGgGGuCGAGGCCa -3'
miRNA:   3'- -UG-UCGCGGaugCUCGCaCC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 18011 0.71 0.246005
Target:  5'- gAUGGCGaCUACG-GCGUGGCguugGAGGUCu -3'
miRNA:   3'- -UGUCGCgGAUGCuCGCACCG----CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 12162 0.71 0.252163
Target:  5'- cGCAGCGCCUugGcGCGcGGUGccaacgccucguAGGCa -3'
miRNA:   3'- -UGUCGCGGAugCuCGCaCCGC------------UCCGg -5'
19083 3' -60.1 NC_004684.1 + 1781 0.71 0.258448
Target:  5'- -gAGCGCgccaacagCUGCGAGaagGGCGAGGUCg -3'
miRNA:   3'- ugUCGCG--------GAUGCUCgcaCCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 526 0.71 0.264859
Target:  5'- cCGGCGCUgACGugcuggccAGCGcGGuCGAGGCCg -3'
miRNA:   3'- uGUCGCGGaUGC--------UCGCaCC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 33477 0.71 0.264859
Target:  5'- gGCGGCGgCUGCG-GUGgacgcGGCGGcGGCCc -3'
miRNA:   3'- -UGUCGCgGAUGCuCGCa----CCGCU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.