miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 3' -60.1 NC_004684.1 + 7880 0.69 0.343993
Target:  5'- cGCAG-GCCUACGAcGCGcccGGUgcuccguuGGGGCCg -3'
miRNA:   3'- -UGUCgCGGAUGCU-CGCa--CCG--------CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 8506 0.69 0.328421
Target:  5'- gACGGUGCCgUGCuGGGauuGUGGCGugcugugcGGGCCg -3'
miRNA:   3'- -UGUCGCGG-AUG-CUCg--CACCGC--------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 8682 0.67 0.467106
Target:  5'- -aGGUGCCUGUGGcCGUGcGUGAGGUCu -3'
miRNA:   3'- ugUCGCGGAUGCUcGCAC-CGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 9018 0.69 0.349567
Target:  5'- cGCGGUGCCgUGCgGGGCGgcaaccGGCGcggcaacgccagcaGGGCCa -3'
miRNA:   3'- -UGUCGCGG-AUG-CUCGCa-----CCGC--------------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 9894 0.66 0.5264
Target:  5'- aGCAGgcCGCCgACGAGUGguccgGGCugaccGAGGCg -3'
miRNA:   3'- -UGUC--GCGGaUGCUCGCa----CCG-----CUCCGg -5'
19083 3' -60.1 NC_004684.1 + 10200 0.72 0.222613
Target:  5'- cCAGCGCCaGCGAGCGcUGGa-GGuGCCu -3'
miRNA:   3'- uGUCGCGGaUGCUCGC-ACCgcUC-CGG- -5'
19083 3' -60.1 NC_004684.1 + 10222 0.72 0.222613
Target:  5'- --uGCGCC--CGAGCGUGcGCGucGGCCa -3'
miRNA:   3'- uguCGCGGauGCUCGCAC-CGCu-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 10792 0.66 0.516304
Target:  5'- gACGGCGUCggcacCGuAGCGgcauccGGCGgcuGGGCCg -3'
miRNA:   3'- -UGUCGCGGau---GC-UCGCa-----CCGC---UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 11714 0.68 0.385203
Target:  5'- cGCuGaCGCCUGCuGGGCGUugguccggguaGGCGAGGaCg -3'
miRNA:   3'- -UGuC-GCGGAUG-CUCGCA-----------CCGCUCCgG- -5'
19083 3' -60.1 NC_004684.1 + 12162 0.71 0.252163
Target:  5'- cGCAGCGCCUugGcGCGcGGUGccaacgccucguAGGCa -3'
miRNA:   3'- -UGUCGCGGAugCuCGCaCCGC------------UCCGg -5'
19083 3' -60.1 NC_004684.1 + 14672 1.11 0.000293
Target:  5'- gACAGCGCCUACGAGCGUGGCGAGGCCg -3'
miRNA:   3'- -UGUCGCGGAUGCUCGCACCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 15916 0.77 0.101188
Target:  5'- gGCAGagGCCUACccggcaccgGAGCcUGGCGGGGCCu -3'
miRNA:   3'- -UGUCg-CGGAUG---------CUCGcACCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 16443 0.66 0.506287
Target:  5'- -uGGCGCacaccauCGuGCGccUGGaCGAGGCCg -3'
miRNA:   3'- ugUCGCGgau----GCuCGC--ACC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 16491 0.66 0.506287
Target:  5'- uGCAGCugGCCaugcacgACGAGCugGUGGUGGacaccgauguGGCCg -3'
miRNA:   3'- -UGUCG--CGGa------UGCUCG--CACCGCU----------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 17798 0.76 0.126881
Target:  5'- aACGaCGCCUGCGGGUGUgaggucuggaccgcaGGCGAaGGCCa -3'
miRNA:   3'- -UGUcGCGGAUGCUCGCA---------------CCGCU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 18011 0.71 0.246005
Target:  5'- gAUGGCGaCUACG-GCGUGGCguugGAGGUCu -3'
miRNA:   3'- -UGUCGCgGAUGCuCGCACCG----CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 18097 0.66 0.496354
Target:  5'- gACGGCaagGCCacCGAGC---GCGAGGCCg -3'
miRNA:   3'- -UGUCG---CGGauGCUCGcacCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 18626 0.66 0.516304
Target:  5'- cCGGCGUCgGCaaguccAGCGUGGCGcuggacauGGCCu -3'
miRNA:   3'- uGUCGCGGaUGc-----UCGCACCGCu-------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 19674 0.68 0.376704
Target:  5'- --cGCGCuCUACcGGCGcGGCGgcaAGGCCu -3'
miRNA:   3'- uguCGCG-GAUGcUCGCaCCGC---UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 19738 0.67 0.457555
Target:  5'- cGCGGCaCCUG-GAGCGUGcaguaccuGCGcGGCCu -3'
miRNA:   3'- -UGUCGcGGAUgCUCGCAC--------CGCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.