miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 3' -52.3 NC_004684.1 + 6750 0.67 0.8732
Target:  5'- gCCCGG--AGCCgucgGGUGcacgaaguGCUCgACGGCa -3'
miRNA:   3'- -GGGCCauUUGGa---CCAU--------UGGGaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 6819 0.68 0.831364
Target:  5'- gCCGuc-GGCCUGGaggAGCuggCCUACGGCg -3'
miRNA:   3'- gGGCcauUUGGACCa--UUG---GGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 6861 0.66 0.927151
Target:  5'- gCCgUGGUGGugCUGcacUGGCUCUGgGGCg -3'
miRNA:   3'- -GG-GCCAUUugGACc--AUUGGGAUgCCG- -5'
19088 3' -52.3 NC_004684.1 + 7291 0.69 0.794132
Target:  5'- uUCCGGaGAACUucggGGUGGCCCggugaaGGCc -3'
miRNA:   3'- -GGGCCaUUUGGa---CCAUUGGGaug---CCG- -5'
19088 3' -52.3 NC_004684.1 + 7528 0.74 0.497303
Target:  5'- gCCCGGcaccGACCUGGccGCCgugGCGGCg -3'
miRNA:   3'- -GGGCCau--UUGGACCauUGGga-UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 7549 0.67 0.89541
Target:  5'- aCgCGGUGcugGACCggccccgGGUGGCgCUgguGCGGCu -3'
miRNA:   3'- -GgGCCAU---UUGGa------CCAUUGgGA---UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 7642 0.66 0.927151
Target:  5'- gCCgUGGcGGGCgUGGUGACCgggucgGCGGCc -3'
miRNA:   3'- -GG-GCCaUUUGgACCAUUGGga----UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 7882 0.66 0.904975
Target:  5'- aCCGGUGAGcacacgucagcgugcCCUGGUGGCCgCcagccagcCGGUg -3'
miRNA:   3'- gGGCCAUUU---------------GGACCAUUGG-Gau------GCCG- -5'
19088 3' -52.3 NC_004684.1 + 7959 0.69 0.803716
Target:  5'- aCCGGUGGGCaaGGccGCCagGCGGCc -3'
miRNA:   3'- gGGCCAUUUGgaCCauUGGgaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 8403 0.71 0.701689
Target:  5'- gUCCGGcgauGCCgaacGGUAACCagcGCGGCa -3'
miRNA:   3'- -GGGCCauu-UGGa---CCAUUGGga-UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 8450 0.66 0.908915
Target:  5'- gCCCGGcgcaAGGCCUGGcUGuugucCCCggaGGCg -3'
miRNA:   3'- -GGGCCa---UUUGGACC-AUu----GGGaugCCG- -5'
19088 3' -52.3 NC_004684.1 + 8619 0.68 0.857154
Target:  5'- gCCCGGUGcACC-GGcaccgccGAUCCU-CGGCa -3'
miRNA:   3'- -GGGCCAUuUGGaCCa------UUGGGAuGCCG- -5'
19088 3' -52.3 NC_004684.1 + 8669 0.68 0.822342
Target:  5'- gCCCGGUGcGGCCaGGUG--CCUGUGGCc -3'
miRNA:   3'- -GGGCCAU-UUGGaCCAUugGGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 11159 0.68 0.822342
Target:  5'- gUCGGUGGACCUGGccGCCa-GCGaGUg -3'
miRNA:   3'- gGGCCAUUUGGACCauUGGgaUGC-CG- -5'
19088 3' -52.3 NC_004684.1 + 11469 0.66 0.927151
Target:  5'- cCCCGGUccACCuUGGccaccAGCUCcgGCGGUa -3'
miRNA:   3'- -GGGCCAuuUGG-ACCa----UUGGGa-UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 11527 0.77 0.385676
Target:  5'- gCUCGGUGGGCCUGGgccacaucGACCCgccccgcaaccacaGCGGCu -3'
miRNA:   3'- -GGGCCAUUUGGACCa-------UUGGGa-------------UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 11597 0.7 0.748065
Target:  5'- gCCGGUGcGCCUGGacgacggcaccgagcUGGCCgU-CGGCc -3'
miRNA:   3'- gGGCCAUuUGGACC---------------AUUGGgAuGCCG- -5'
19088 3' -52.3 NC_004684.1 + 11737 0.71 0.690935
Target:  5'- uCCgGGUAGGCgaGG--ACgCCUAUGGCa -3'
miRNA:   3'- -GGgCCAUUUGgaCCauUG-GGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 11946 0.7 0.754237
Target:  5'- gCCaUGGUcgccAGCCUGGca--CCUGCGGCg -3'
miRNA:   3'- -GG-GCCAu---UUGGACCauugGGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 12220 0.68 0.857154
Target:  5'- aCCGGguu-CC-GGUAcgugccGCCCgacgGCGGCg -3'
miRNA:   3'- gGGCCauuuGGaCCAU------UGGGa---UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.