miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 3' -52.3 NC_004684.1 + 168 0.66 0.913388
Target:  5'- aCCGGUGaccggguuggucggGACCaccaccaaGGUGGCCCU--GGCa -3'
miRNA:   3'- gGGCCAU--------------UUGGa-------CCAUUGGGAugCCG- -5'
19088 3' -52.3 NC_004684.1 + 606 0.67 0.89541
Target:  5'- cUCCGGgccgccuGACCUGGacGACCUggccgacgagcACGGCg -3'
miRNA:   3'- -GGGCCau-----UUGGACCa-UUGGGa----------UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 711 0.67 0.865297
Target:  5'- gCCgGGUGggaaGACCUGGgcACCgc-CGGUg -3'
miRNA:   3'- -GGgCCAU----UUGGACCauUGGgauGCCG- -5'
19088 3' -52.3 NC_004684.1 + 1036 0.68 0.831364
Target:  5'- aCCCGcGUcgcCCUGGccGCCCgcccCGGCg -3'
miRNA:   3'- -GGGC-CAuuuGGACCauUGGGau--GCCG- -5'
19088 3' -52.3 NC_004684.1 + 1231 0.66 0.902295
Target:  5'- cCUCGGc-GGCCUGGUcggucGCCCggcccCGGCc -3'
miRNA:   3'- -GGGCCauUUGGACCAu----UGGGau---GCCG- -5'
19088 3' -52.3 NC_004684.1 + 1484 0.76 0.400079
Target:  5'- gCCCGGUGcggcGGcCCUGGUGGCcaaCCUGCGcGCc -3'
miRNA:   3'- -GGGCCAU----UU-GGACCAUUG---GGAUGC-CG- -5'
19088 3' -52.3 NC_004684.1 + 1489 0.66 0.927151
Target:  5'- gCCggaGGUGGcccGCCUGuugcgcGACCaCUACGGCg -3'
miRNA:   3'- -GGg--CCAUU---UGGACca----UUGG-GAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 1575 0.68 0.831364
Target:  5'- gCCGGUGccuCCgGGUcaccuGCCCggugcACGGCa -3'
miRNA:   3'- gGGCCAUuu-GGaCCAu----UGGGa----UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 1692 0.66 0.915265
Target:  5'- aCCCGGgcccGAACCUGc--ACCUgGCaGGCa -3'
miRNA:   3'- -GGGCCa---UUUGGACcauUGGGaUG-CCG- -5'
19088 3' -52.3 NC_004684.1 + 1922 0.69 0.794132
Target:  5'- aCCCGGccugccGGGCCUGGUAccgGCgC-ACGGUg -3'
miRNA:   3'- -GGGCCa-----UUUGGACCAU---UGgGaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 2033 0.71 0.690935
Target:  5'- aCCGucgc-CCUGGUGGCCCUGgGGg -3'
miRNA:   3'- gGGCcauuuGGACCAUUGGGAUgCCg -5'
19088 3' -52.3 NC_004684.1 + 2952 0.66 0.927151
Target:  5'- gUCCGGcgcgcacaucgAGACCaucGGU-GCCCUggACGGCg -3'
miRNA:   3'- -GGGCCa----------UUUGGa--CCAuUGGGA--UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 3492 0.69 0.813123
Target:  5'- aCCCGGU--ACCUGG--ACCaccUGGCa -3'
miRNA:   3'- -GGGCCAuuUGGACCauUGGgauGCCG- -5'
19088 3' -52.3 NC_004684.1 + 3656 0.72 0.625606
Target:  5'- gCCCGGU--GCCgGGUcAUCgUACGGUg -3'
miRNA:   3'- -GGGCCAuuUGGaCCAuUGGgAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 4227 0.65 0.931053
Target:  5'- aCCCGGcgcgcAACCUGGUucGgagucugagccgguGCCCgGCGGa -3'
miRNA:   3'- -GGGCCau---UUGGACCA--U--------------UGGGaUGCCg -5'
19088 3' -52.3 NC_004684.1 + 4483 0.67 0.865297
Target:  5'- aCCGGccaGGGCCUGGcccGCCgUggcaACGGCa -3'
miRNA:   3'- gGGCCa--UUUGGACCau-UGGgA----UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 4573 0.67 0.894707
Target:  5'- aCCCGGUcgGCCUGaaAGCucccccgCCUGCccGGCa -3'
miRNA:   3'- -GGGCCAuuUGGACcaUUG-------GGAUG--CCG- -5'
19088 3' -52.3 NC_004684.1 + 4890 0.68 0.821429
Target:  5'- gCUCaGgcGGCCUGGUcgccaccGGCCUcgGCGGCa -3'
miRNA:   3'- -GGGcCauUUGGACCA-------UUGGGa-UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 5634 0.68 0.822342
Target:  5'- gCUGGac-GCCUGGUucGCCCgugGCGGa -3'
miRNA:   3'- gGGCCauuUGGACCAu-UGGGa--UGCCg -5'
19088 3' -52.3 NC_004684.1 + 5689 0.68 0.848778
Target:  5'- gCCGGg--GCCcGGccuGCCC-ACGGCa -3'
miRNA:   3'- gGGCCauuUGGaCCau-UGGGaUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.