miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 3' -52.3 NC_004684.1 + 4227 0.65 0.931053
Target:  5'- aCCCGGcgcgcAACCUGGUucGgagucugagccgguGCCCgGCGGa -3'
miRNA:   3'- -GGGCCau---UUGGACCA--U--------------UGGGaUGCCg -5'
19088 3' -52.3 NC_004684.1 + 22547 0.66 0.902295
Target:  5'- gCCCGGUGuguucGCC-GGUAucGCCacaucggucggUACGGCg -3'
miRNA:   3'- -GGGCCAUu----UGGaCCAU--UGGg----------AUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 43724 0.66 0.921344
Target:  5'- gCUGGUAuGCCUGGacauagcgcAGCgCCU-CGGCu -3'
miRNA:   3'- gGGCCAUuUGGACCa--------UUG-GGAuGCCG- -5'
19088 3' -52.3 NC_004684.1 + 7882 0.66 0.904975
Target:  5'- aCCGGUGAGcacacgucagcgugcCCUGGUGGCCgCcagccagcCGGUg -3'
miRNA:   3'- gGGCCAUUU---------------GGACCAUUGG-Gau------GCCG- -5'
19088 3' -52.3 NC_004684.1 + 66483 0.66 0.914642
Target:  5'- aCCCGGUGgcggcuaGGCCUuggcGGcGGCCUcGCGGg -3'
miRNA:   3'- -GGGCCAU-------UUGGA----CCaUUGGGaUGCCg -5'
19088 3' -52.3 NC_004684.1 + 21920 0.66 0.902295
Target:  5'- gCCCGGUGAccACCgccgGG-AGCaucaaCCU-CGGCg -3'
miRNA:   3'- -GGGCCAUU--UGGa---CCaUUG-----GGAuGCCG- -5'
19088 3' -52.3 NC_004684.1 + 65813 0.66 0.908915
Target:  5'- aCCGG---GCa-GGUGACCCggaggcaccgGCGGCu -3'
miRNA:   3'- gGGCCauuUGgaCCAUUGGGa---------UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 48133 0.66 0.902295
Target:  5'- uCCCGGUcgGCCcGGUGAUgaUgggagcguugcGCGGCu -3'
miRNA:   3'- -GGGCCAuuUGGaCCAUUGggA-----------UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 52225 0.66 0.908915
Target:  5'- cCCCGGcgucgaucAGGCCgUGGU-GCCaCaGCGGCg -3'
miRNA:   3'- -GGGCCa-------UUUGG-ACCAuUGG-GaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 67351 0.66 0.899573
Target:  5'- aUCCGGUuuucggggaccCCUGGUAccGCCCc-CGGUg -3'
miRNA:   3'- -GGGCCAuuu--------GGACCAU--UGGGauGCCG- -5'
19088 3' -52.3 NC_004684.1 + 19728 0.66 0.920748
Target:  5'- aCUCGGUGAgcgcggcACCUGG-AGCgugcaguaCCUgcGCGGCc -3'
miRNA:   3'- -GGGCCAUU-------UGGACCaUUG--------GGA--UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 47153 0.66 0.908915
Target:  5'- cCCCGGUGc-CCaGG-AGCaCCguaGCGGCg -3'
miRNA:   3'- -GGGCCAUuuGGaCCaUUG-GGa--UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 12956 0.66 0.915265
Target:  5'- cCCCGGUGcuCCcGccGACCg-GCGGCa -3'
miRNA:   3'- -GGGCCAUuuGGaCcaUUGGgaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 1692 0.66 0.915265
Target:  5'- aCCCGGgcccGAACCUGc--ACCUgGCaGGCa -3'
miRNA:   3'- -GGGCCa---UUUGGACcauUGGGaUG-CCG- -5'
19088 3' -52.3 NC_004684.1 + 54065 0.66 0.915265
Target:  5'- aCCaGGUuuACCgggugcGGUGACCCgggucaaGGCg -3'
miRNA:   3'- gGG-CCAuuUGGa-----CCAUUGGGaug----CCG- -5'
19088 3' -52.3 NC_004684.1 + 168 0.66 0.913388
Target:  5'- aCCGGUGaccggguuggucggGACCaccaccaaGGUGGCCCU--GGCa -3'
miRNA:   3'- gGGCCAU--------------UUGGa-------CCAUUGGGAugCCG- -5'
19088 3' -52.3 NC_004684.1 + 13995 0.66 0.921344
Target:  5'- gCCCGGcc-ACCUGGacacggugcagUGGCCCaacuCGGUc -3'
miRNA:   3'- -GGGCCauuUGGACC-----------AUUGGGau--GCCG- -5'
19088 3' -52.3 NC_004684.1 + 63980 0.66 0.915265
Target:  5'- -gCGGUAGACCUccaucACCUUgGCGGCg -3'
miRNA:   3'- ggGCCAUUUGGAccau-UGGGA-UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 1231 0.66 0.902295
Target:  5'- cCUCGGc-GGCCUGGUcggucGCCCggcccCGGCc -3'
miRNA:   3'- -GGGCCauUUGGACCAu----UGGGau---GCCG- -5'
19088 3' -52.3 NC_004684.1 + 49299 0.66 0.908915
Target:  5'- gCUCGGUGGccuuGCCguccaGGaucGACCCgucgGCGGCc -3'
miRNA:   3'- -GGGCCAUU----UGGa----CCa--UUGGGa---UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.