miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 3' -52.3 NC_004684.1 + 11737 0.71 0.690935
Target:  5'- uCCgGGUAGGCgaGG--ACgCCUAUGGCa -3'
miRNA:   3'- -GGgCCAUUUGgaCCauUG-GGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 37511 0.72 0.625606
Target:  5'- aCCCGGUuacgacGACCUGau-GCacgaCUGCGGCg -3'
miRNA:   3'- -GGGCCAu-----UUGGACcauUGg---GAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 39108 0.72 0.636538
Target:  5'- aCCCGGU-GACCgGGUAcGCCUgcgcgggguCGGCa -3'
miRNA:   3'- -GGGCCAuUUGGaCCAU-UGGGau-------GCCG- -5'
19088 3' -52.3 NC_004684.1 + 37672 0.72 0.647466
Target:  5'- aCCCGGUGcGCCaGGUGGauuaCCUG-GGCc -3'
miRNA:   3'- -GGGCCAUuUGGaCCAUUg---GGAUgCCG- -5'
19088 3' -52.3 NC_004684.1 + 66667 0.71 0.657289
Target:  5'- gCCCGGUc-ACCggcGGUGcccaggucuucccACCCgGCGGCg -3'
miRNA:   3'- -GGGCCAuuUGGa--CCAU-------------UGGGaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 59373 0.71 0.669269
Target:  5'- -aCGGUGu-CCUGGaaccGCCCgGCGGCa -3'
miRNA:   3'- ggGCCAUuuGGACCau--UGGGaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 16265 0.71 0.680125
Target:  5'- gCCCGGUGuucgcGCCg---GGCCCgacGCGGCg -3'
miRNA:   3'- -GGGCCAUu----UGGaccaUUGGGa--UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 28260 0.71 0.680125
Target:  5'- aCCCGGccAGCCUGGUGcgcgaGgCCgcUGGCg -3'
miRNA:   3'- -GGGCCauUUGGACCAU-----UgGGauGCCG- -5'
19088 3' -52.3 NC_004684.1 + 65938 0.71 0.690935
Target:  5'- gCCCGGUcucGACCaGGUggUCCagcuCGGCc -3'
miRNA:   3'- -GGGCCAu--UUGGaCCAuuGGGau--GCCG- -5'
19088 3' -52.3 NC_004684.1 + 36925 0.72 0.625606
Target:  5'- gCCCGGUcgAGGCCgGGUGgacACgCCUGCuGGUg -3'
miRNA:   3'- -GGGCCA--UUUGGaCCAU---UG-GGAUG-CCG- -5'
19088 3' -52.3 NC_004684.1 + 66607 0.72 0.614681
Target:  5'- aCCUGGUucuuggccAGCUUGGUG--CCUGCGGCc -3'
miRNA:   3'- -GGGCCAu-------UUGGACCAUugGGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 28417 0.73 0.592883
Target:  5'- gCCGGUuGACCUGGUggUCg-ACuGGCa -3'
miRNA:   3'- gGGCCAuUUGGACCAuuGGgaUG-CCG- -5'
19088 3' -52.3 NC_004684.1 + 11527 0.77 0.385676
Target:  5'- gCUCGGUGGGCCUGGgccacaucGACCCgccccgcaaccacaGCGGCu -3'
miRNA:   3'- -GGGCCAUUUGGACCa-------UUGGGa-------------UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 58327 0.76 0.389244
Target:  5'- gCCGGgucauggcgcGCCcGGUGGCCCUGCuGGCg -3'
miRNA:   3'- gGGCCauu-------UGGaCCAUUGGGAUG-CCG- -5'
19088 3' -52.3 NC_004684.1 + 15927 0.76 0.418559
Target:  5'- aCCCGGcaccgGAGCCUGGcggGGCCUacauCGGCa -3'
miRNA:   3'- -GGGCCa----UUUGGACCa--UUGGGau--GCCG- -5'
19088 3' -52.3 NC_004684.1 + 57793 0.75 0.447226
Target:  5'- aCUGGgccaAGACCUGGgAACCCgaccACGGCc -3'
miRNA:   3'- gGGCCa---UUUGGACCaUUGGGa---UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 30053 0.75 0.457023
Target:  5'- aUCCuGUGAGCCUGGUAccgGCCUccCGGCc -3'
miRNA:   3'- -GGGcCAUUUGGACCAU---UGGGauGCCG- -5'
19088 3' -52.3 NC_004684.1 + 36592 0.75 0.457023
Target:  5'- aCCGGcaUGAcCCUGGUGGCCCc-CGGUg -3'
miRNA:   3'- gGGCC--AUUuGGACCAUUGGGauGCCG- -5'
19088 3' -52.3 NC_004684.1 + 20153 0.74 0.507624
Target:  5'- gCCGGUGAcgGCCcGGc--CCUUGCGGCg -3'
miRNA:   3'- gGGCCAUU--UGGaCCauuGGGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 27692 0.74 0.527476
Target:  5'- gUCCGGUGAuugcgGCCUGGUGgaaagcgaauacgGCCCg--GGCa -3'
miRNA:   3'- -GGGCCAUU-----UGGACCAU-------------UGGGaugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.