miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 3' -52.3 NC_004684.1 + 13334 1.16 0.001121
Target:  5'- aCCCGGUAAACCUGGUAACCCUACGGCg -3'
miRNA:   3'- -GGGCCAUUUGGACCAUUGGGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 51482 0.83 0.16522
Target:  5'- gCCgGGUAGGCCUcugccGGgacGCCCUGCGGCu -3'
miRNA:   3'- -GGgCCAUUUGGA-----CCau-UGGGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 14251 0.8 0.239484
Target:  5'- aCCCGGUGGACCcGGUcauuUCCgGCGGCa -3'
miRNA:   3'- -GGGCCAUUUGGaCCAuu--GGGaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 38833 0.77 0.347872
Target:  5'- gCCCGac-GGCCUGGUGGCCCU--GGCg -3'
miRNA:   3'- -GGGCcauUUGGACCAUUGGGAugCCG- -5'
19088 3' -52.3 NC_004684.1 + 11527 0.77 0.385676
Target:  5'- gCUCGGUGGGCCUGGgccacaucGACCCgccccgcaaccacaGCGGCu -3'
miRNA:   3'- -GGGCCAUUUGGACCa-------UUGGGa-------------UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 58327 0.76 0.389244
Target:  5'- gCCGGgucauggcgcGCCcGGUGGCCCUGCuGGCg -3'
miRNA:   3'- gGGCCauu-------UGGaCCAUUGGGAUG-CCG- -5'
19088 3' -52.3 NC_004684.1 + 1484 0.76 0.400079
Target:  5'- gCCCGGUGcggcGGcCCUGGUGGCcaaCCUGCGcGCc -3'
miRNA:   3'- -GGGCCAU----UU-GGACCAUUG---GGAUGC-CG- -5'
19088 3' -52.3 NC_004684.1 + 55188 0.76 0.417623
Target:  5'- aCCCGGUGAugCUGGaacuggGACUggcagccgauuucUUACGGCa -3'
miRNA:   3'- -GGGCCAUUugGACCa-----UUGG-------------GAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 15927 0.76 0.418559
Target:  5'- aCCCGGcaccgGAGCCUGGcggGGCCUacauCGGCa -3'
miRNA:   3'- -GGGCCa----UUUGGACCa--UUGGGau--GCCG- -5'
19088 3' -52.3 NC_004684.1 + 16728 0.75 0.437548
Target:  5'- aCCGGgcGcacGCCUGGUccgcACCCccgACGGCg -3'
miRNA:   3'- gGGCCauU---UGGACCAu---UGGGa--UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 57793 0.75 0.447226
Target:  5'- aCUGGgccaAGACCUGGgAACCCgaccACGGCc -3'
miRNA:   3'- gGGCCa---UUUGGACCaUUGGGa---UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 36592 0.75 0.457023
Target:  5'- aCCGGcaUGAcCCUGGUGGCCCc-CGGUg -3'
miRNA:   3'- gGGCC--AUUuGGACCAUUGGGauGCCG- -5'
19088 3' -52.3 NC_004684.1 + 30053 0.75 0.457023
Target:  5'- aUCCuGUGAGCCUGGUAccgGCCUccCGGCc -3'
miRNA:   3'- -GGGcCAUUUGGACCAU---UGGGauGCCG- -5'
19088 3' -52.3 NC_004684.1 + 26023 0.75 0.475946
Target:  5'- gCCCGGaugaaucggucgaUGAACCgGGUGGCCUUGgccCGGCc -3'
miRNA:   3'- -GGGCC-------------AUUUGGaCCAUUGGGAU---GCCG- -5'
19088 3' -52.3 NC_004684.1 + 7528 0.74 0.497303
Target:  5'- gCCCGGcaccGACCUGGccGCCgugGCGGCg -3'
miRNA:   3'- -GGGCCau--UUGGACCauUGGga-UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 20153 0.74 0.507624
Target:  5'- gCCGGUGAcgGCCcGGc--CCUUGCGGCg -3'
miRNA:   3'- gGGCCAUU--UGGaCCauuGGGAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 27692 0.74 0.527476
Target:  5'- gUCCGGUGAuugcgGCCUGGUGgaaagcgaauacgGCCCg--GGCa -3'
miRNA:   3'- -GGGCCAUU-----UGGACCAU-------------UGGGaugCCG- -5'
19088 3' -52.3 NC_004684.1 + 39040 0.73 0.539101
Target:  5'- aCCCGGUAGACgguggccugCUGGUugcgcuugGACCC--CGGCg -3'
miRNA:   3'- -GGGCCAUUUG---------GACCA--------UUGGGauGCCG- -5'
19088 3' -52.3 NC_004684.1 + 55603 0.73 0.560451
Target:  5'- uCCaCGGU-GGCCUGGUcGGCCC-ACGGg -3'
miRNA:   3'- -GG-GCCAuUUGGACCA-UUGGGaUGCCg -5'
19088 3' -52.3 NC_004684.1 + 22005 0.73 0.570137
Target:  5'- gUCCGGUGGAgCUGGUcagcaucGACCUgcUGGCc -3'
miRNA:   3'- -GGGCCAUUUgGACCA-------UUGGGauGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.