miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 5' -59.5 NC_004684.1 + 19602 0.69 0.383072
Target:  5'- gCCGCCGaGAAcauccuGGCCGAcugacgcacuaccGGGGGCGCGu -3'
miRNA:   3'- -GGCGGUgCUU------CCGGCU-------------CCUCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 26977 0.69 0.375388
Target:  5'- gCCGCCAUccAGGCCGGugcgagcgcGGcGGGCGCGg -3'
miRNA:   3'- -GGCGGUGcuUCCGGCU---------CC-UCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 19094 0.69 0.375388
Target:  5'- aCUGCUggugcGCGAAGGCCGguGGGAcGuGCGCAu -3'
miRNA:   3'- -GGCGG-----UGCUUCCGGC--UCCU-C-CGUGUu -5'
19088 5' -59.5 NC_004684.1 + 26536 0.69 0.348921
Target:  5'- gCGCCugGGcggucAGGCCGGGGuguacgcguuccGGCGCGc -3'
miRNA:   3'- gGCGGugCU-----UCCGGCUCCu-----------CCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 40631 0.69 0.341721
Target:  5'- aCCGCCGCGc-GGCCGAcgaacuuGGGGGCc--- -3'
miRNA:   3'- -GGCGGUGCuuCCGGCU-------CCUCCGuguu -5'
19088 5' -59.5 NC_004684.1 + 13568 0.7 0.326876
Target:  5'- uCCaGCCugGAAGcGCaCGcccgcauGGAGGCGCAAc -3'
miRNA:   3'- -GG-CGGugCUUC-CG-GCu------CCUCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 54279 0.7 0.319257
Target:  5'- gCUGCCGCGcuGGCCGGuGGGGCGg-- -3'
miRNA:   3'- -GGCGGUGCuuCCGGCUcCUCCGUguu -5'
19088 5' -59.5 NC_004684.1 + 59858 0.7 0.31103
Target:  5'- gCCGCCACGgcGGCC-AGGucgguccGGGCAgGu -3'
miRNA:   3'- -GGCGGUGCuuCCGGcUCC-------UCCGUgUu -5'
19088 5' -59.5 NC_004684.1 + 15508 0.7 0.300074
Target:  5'- gUGCCACcaccGAGGCCGAggccuuggaggugcuGGAGGUGCAGg -3'
miRNA:   3'- gGCGGUGc---UUCCGGCU---------------CCUCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 10339 0.71 0.283169
Target:  5'- gCCGCCAuCGAccccGCCGGGGAGGaCAUg- -3'
miRNA:   3'- -GGCGGU-GCUuc--CGGCUCCUCC-GUGuu -5'
19088 5' -59.5 NC_004684.1 + 55561 0.71 0.27635
Target:  5'- gCCGCCGuggccCGguGGCCGGGGguccAGGCACc- -3'
miRNA:   3'- -GGCGGU-----GCuuCCGGCUCC----UCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 246 0.71 0.269664
Target:  5'- gCCGCCACGAucaucgugcAGGCCGAcgGcGAGGCcuucguGCAc -3'
miRNA:   3'- -GGCGGUGCU---------UCCGGCU--C-CUCCG------UGUu -5'
19088 5' -59.5 NC_004684.1 + 12851 0.71 0.256683
Target:  5'- -gGUCGCGGAGGCCGAGGccGC-CAc -3'
miRNA:   3'- ggCGGUGCUUCCGGCUCCucCGuGUu -5'
19088 5' -59.5 NC_004684.1 + 15015 0.71 0.256683
Target:  5'- gCCGCCugGAucGGCUG-GGAcGGCACc- -3'
miRNA:   3'- -GGCGGugCUu-CCGGCuCCU-CCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 66693 0.72 0.244218
Target:  5'- gCCGuCCAcCGGcggcugaccucgGGGCCGAGGAucaGGCGCAc -3'
miRNA:   3'- -GGC-GGU-GCU------------UCCGGCUCCU---CCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 18835 0.73 0.209825
Target:  5'- cUCGgCGCGcAGGCCGAGGuguGGCAgGAg -3'
miRNA:   3'- -GGCgGUGCuUCCGGCUCCu--CCGUgUU- -5'
19088 5' -59.5 NC_004684.1 + 16201 0.73 0.204515
Target:  5'- cCCGgugaugacaguUCACGGAGG-UGAGGAGGCGCGAu -3'
miRNA:   3'- -GGC-----------GGUGCUUCCgGCUCCUCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 5592 0.73 0.204515
Target:  5'- cCCGCCugcCGAcgGGGCCGAGcuGGCGCGc -3'
miRNA:   3'- -GGCGGu--GCU--UCCGGCUCcuCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 15515 0.73 0.199323
Target:  5'- gCCGCC-CG-GGGCCGGgcgcuGGAGGCGCu- -3'
miRNA:   3'- -GGCGGuGCuUCCGGCU-----CCUCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 54280 0.73 0.194246
Target:  5'- gCCGCCACcc-GGCCGGGGGuGCGCGc -3'
miRNA:   3'- -GGCGGUGcuuCCGGCUCCUcCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.