miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19096 5' -57.7 NC_004684.1 + 3471 0.66 0.57122
Target:  5'- uUCGGCGCGUACAacGCCGuuaccCGGUa- -3'
miRNA:   3'- cAGCCGCGCAUGUc-CGGCuc---GUCAaa -5'
19096 5' -57.7 NC_004684.1 + 5858 0.74 0.217659
Target:  5'- --aGGCGUGcgacugGCAGGCCGGGCAGc-- -3'
miRNA:   3'- cagCCGCGCa-----UGUCCGGCUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 7410 0.67 0.54357
Target:  5'- -gCGGCGCGUGCGgcaagguccgggugcGGCaCGAGCGc--- -3'
miRNA:   3'- caGCCGCGCAUGU---------------CCG-GCUCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 7850 0.67 0.518447
Target:  5'- -aCGGCGCGcGCuGGCgGuGCAGg-- -3'
miRNA:   3'- caGCCGCGCaUGuCCGgCuCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 8899 0.69 0.419663
Target:  5'- aGUCGGCGCGgcaagaaggGCGGGCgCG-GCAaGUUc -3'
miRNA:   3'- -CAGCCGCGCa--------UGUCCG-GCuCGU-CAAa -5'
19096 5' -57.7 NC_004684.1 + 10112 0.69 0.429036
Target:  5'- -gCGGCucgcCGUcACAGGCCGAGCuGUg- -3'
miRNA:   3'- caGCCGc---GCA-UGUCCGGCUCGuCAaa -5'
19096 5' -57.7 NC_004684.1 + 10165 0.67 0.559474
Target:  5'- -gUGGgGCGUuuguccgGCAGGCUGAGCAc--- -3'
miRNA:   3'- caGCCgCGCA-------UGUCCGGCUCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 10906 1.05 0.001146
Target:  5'- gGUCGGCGCGUACAGGCCGAGCAGUUUg -3'
miRNA:   3'- -CAGCCGCGCAUGUCCGGCUCGUCAAA- -5'
19096 5' -57.7 NC_004684.1 + 11000 0.66 0.603518
Target:  5'- aGUUGGCGCGcUGCAuGuccaucagcaCCGAGCGGUg- -3'
miRNA:   3'- -CAGCCGCGC-AUGUcC----------GGCUCGUCAaa -5'
19096 5' -57.7 NC_004684.1 + 11097 0.7 0.383448
Target:  5'- -cCGGCGCGccaGGGCCGGGCuGa-- -3'
miRNA:   3'- caGCCGCGCaugUCCGGCUCGuCaaa -5'
19096 5' -57.7 NC_004684.1 + 11494 0.66 0.603518
Target:  5'- -cCGGCG-GUaACAGGCCaucGGGCAGg-- -3'
miRNA:   3'- caGCCGCgCA-UGUCCGG---CUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 13965 0.67 0.528862
Target:  5'- cUCGGUGaCGUccugacGCAGGCagaccugGAGCAGUUg -3'
miRNA:   3'- cAGCCGC-GCA------UGUCCGg------CUCGUCAAa -5'
19096 5' -57.7 NC_004684.1 + 18835 0.79 0.091129
Target:  5'- cUCGGCGC--GCAGGCCGAGguGUg- -3'
miRNA:   3'- cAGCCGCGcaUGUCCGGCUCguCAaa -5'
19096 5' -57.7 NC_004684.1 + 19683 0.68 0.497869
Target:  5'- -cCGGCGCGgcgGCAaggccuGGCCGAGCcaAGa-- -3'
miRNA:   3'- caGCCGCGCa--UGU------CCGGCUCG--UCaaa -5'
19096 5' -57.7 NC_004684.1 + 22833 0.75 0.167053
Target:  5'- -cCGGCG-GUGCAGGCCGGGCuGg-- -3'
miRNA:   3'- caGCCGCgCAUGUCCGGCUCGuCaaa -5'
19096 5' -57.7 NC_004684.1 + 24992 0.81 0.070661
Target:  5'- cGUCGGCGCGUugGGGUCG-GCGGg-- -3'
miRNA:   3'- -CAGCCGCGCAugUCCGGCuCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 25870 0.71 0.32526
Target:  5'- -aCGGCcuCGgcCAGGCCGGGCAGa-- -3'
miRNA:   3'- caGCCGc-GCauGUCCGGCUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 26542 0.66 0.57122
Target:  5'- --gGGCG-GU-CAGGCCGGGguGUa- -3'
miRNA:   3'- cagCCGCgCAuGUCCGGCUCguCAaa -5'
19096 5' -57.7 NC_004684.1 + 29356 0.77 0.120426
Target:  5'- gGUCGGCGCGUACAGGgCGucCAGg-- -3'
miRNA:   3'- -CAGCCGCGCAUGUCCgGCucGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 30666 0.66 0.625183
Target:  5'- -aCGGCGa--ACAGGUCGAuGCGGUa- -3'
miRNA:   3'- caGCCGCgcaUGUCCGGCU-CGUCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.