miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19096 5' -57.7 NC_004684.1 + 22833 0.75 0.167053
Target:  5'- -cCGGCG-GUGCAGGCCGGGCuGg-- -3'
miRNA:   3'- caGCCGCgCAUGUCCGGCUCGuCaaa -5'
19096 5' -57.7 NC_004684.1 + 45913 0.66 0.592717
Target:  5'- uGUUGGUGCGcucGCGGGCau-GCAGUUc -3'
miRNA:   3'- -CAGCCGCGCa--UGUCCGgcuCGUCAAa -5'
19096 5' -57.7 NC_004684.1 + 48987 0.66 0.57122
Target:  5'- cGUCGGUGCccUGCuGGCCGGGCc---- -3'
miRNA:   3'- -CAGCCGCGc-AUGuCCGGCUCGucaaa -5'
19096 5' -57.7 NC_004684.1 + 26542 0.66 0.57122
Target:  5'- --gGGCG-GU-CAGGCCGGGguGUa- -3'
miRNA:   3'- cagCCGCgCAuGUCCGGCUCguCAaa -5'
19096 5' -57.7 NC_004684.1 + 51271 0.67 0.539354
Target:  5'- aUCGGCuCGUACAGGUCG-GCGu--- -3'
miRNA:   3'- cAGCCGcGCAUGUCCGGCuCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 19683 0.68 0.497869
Target:  5'- -cCGGCGCGgcgGCAaggccuGGCCGAGCcaAGa-- -3'
miRNA:   3'- caGCCGCGCa--UGU------CCGGCUCG--UCaaa -5'
19096 5' -57.7 NC_004684.1 + 50207 0.68 0.487718
Target:  5'- cGUCGGCGuCGUGCcaGGuGCCGAacacgcGCAGg-- -3'
miRNA:   3'- -CAGCCGC-GCAUG--UC-CGGCU------CGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 43766 0.68 0.487718
Target:  5'- -cCGGCGUGguCAGGCCGGGUAcGUc- -3'
miRNA:   3'- caGCCGCGCauGUCCGGCUCGU-CAaa -5'
19096 5' -57.7 NC_004684.1 + 49222 0.68 0.487718
Target:  5'- gGUCGGUGC---CGGGCCGGGCGu--- -3'
miRNA:   3'- -CAGCCGCGcauGUCCGGCUCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 48957 0.68 0.467716
Target:  5'- cGUCGGCGgGcggGguGGCCgGGGCGGg-- -3'
miRNA:   3'- -CAGCCGCgCa--UguCCGG-CUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 5858 0.74 0.217659
Target:  5'- --aGGCGUGcgacugGCAGGCCGGGCAGc-- -3'
miRNA:   3'- cagCCGCGCa-----UGUCCGGCUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 61696 0.74 0.217659
Target:  5'- cGUCGGUGcCGUggGCAGGCCGGGCc---- -3'
miRNA:   3'- -CAGCCGC-GCA--UGUCCGGCUCGucaaa -5'
19096 5' -57.7 NC_004684.1 + 35632 0.71 0.317503
Target:  5'- uUCcGCGCGUGguGGCCGAGUcGUUc -3'
miRNA:   3'- cAGcCGCGCAUguCCGGCUCGuCAAa -5'
19096 5' -57.7 NC_004684.1 + 25870 0.71 0.32526
Target:  5'- -aCGGCcuCGgcCAGGCCGGGCAGa-- -3'
miRNA:   3'- caGCCGc-GCauGUCCGGCUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 43447 0.71 0.341193
Target:  5'- gGUCGGUGCG-GCGGGCgCGgcAGCAGg-- -3'
miRNA:   3'- -CAGCCGCGCaUGUCCG-GC--UCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 44910 0.7 0.349368
Target:  5'- cGUUGGCGUcgGUGCGcGCCGGGUAGUc- -3'
miRNA:   3'- -CAGCCGCG--CAUGUcCGGCUCGUCAaa -5'
19096 5' -57.7 NC_004684.1 + 40336 0.68 0.457875
Target:  5'- cUCGGCGCuggGCAGGUCGcuGGCGGc-- -3'
miRNA:   3'- cAGCCGCGca-UGUCCGGC--UCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 60592 0.66 0.625183
Target:  5'- -aCGGCGuCGUAguGGCCGucgucCAGUg- -3'
miRNA:   3'- caGCCGC-GCAUguCCGGCuc---GUCAaa -5'
19096 5' -57.7 NC_004684.1 + 24992 0.81 0.070661
Target:  5'- cGUCGGCGCGUugGGGUCG-GCGGg-- -3'
miRNA:   3'- -CAGCCGCGCAugUCCGGCuCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 57378 0.8 0.076938
Target:  5'- gGUCGGCGCGcgGCAGGUCcGGCAGUUc -3'
miRNA:   3'- -CAGCCGCGCa-UGUCCGGcUCGUCAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.