miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19098 3' -53.3 NC_004684.1 + 19236 0.69 0.702708
Target:  5'- aACUGGgaGCCGCGCAAc--GCuCCCa -3'
miRNA:   3'- cUGACCauUGGCGCGUUuucUG-GGGc -5'
19098 3' -53.3 NC_004684.1 + 19464 0.67 0.824075
Target:  5'- cGGC-GGUGGcCCGCGCGAcaugcGCCCCu -3'
miRNA:   3'- -CUGaCCAUU-GGCGCGUUuuc--UGGGGc -5'
19098 3' -53.3 NC_004684.1 + 20016 0.67 0.814819
Target:  5'- cACcGGaGGCCGUGguGccugAAGACCCCGc -3'
miRNA:   3'- cUGaCCaUUGGCGCguU----UUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 20062 0.66 0.867137
Target:  5'- cGCguucGUGGCCGCGCucAAGcuggcguucaACCCCGa -3'
miRNA:   3'- cUGac--CAUUGGCGCGuuUUC----------UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 20351 0.7 0.635954
Target:  5'- ---cGGUGcaccgucACCGCGCAGGccACCCCGa -3'
miRNA:   3'- cugaCCAU-------UGGCGCGUUUucUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 21332 0.72 0.496728
Target:  5'- -cCUGGUccAGCCGCGCGGcAAGACCgUGc -3'
miRNA:   3'- cuGACCA--UUGGCGCGUU-UUCUGGgGC- -5'
19098 3' -53.3 NC_004684.1 + 25252 0.71 0.600731
Target:  5'- cGCUGGUGaaggcgcuggagaaGCUGCGCAccAAGGGCCuuCCGg -3'
miRNA:   3'- cUGACCAU--------------UGGCGCGU--UUUCUGG--GGC- -5'
19098 3' -53.3 NC_004684.1 + 26907 0.67 0.814819
Target:  5'- uGCUGGcgcacuCgGCGCAGaccgccGAGACCCCc -3'
miRNA:   3'- cUGACCauu---GgCGCGUU------UUCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 27760 0.7 0.615024
Target:  5'- ---aGGUGACCGUGCcgcgcGACCCCc -3'
miRNA:   3'- cugaCCAUUGGCGCGuuuu-CUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 27840 0.67 0.784949
Target:  5'- uGCUGGgcACCGagcgcgcugugcaCGCAGGAGugCCgGu -3'
miRNA:   3'- cUGACCauUGGC-------------GCGUUUUCugGGgC- -5'
19098 3' -53.3 NC_004684.1 + 28128 0.68 0.755617
Target:  5'- uGCUGGUGGCCugcaCGCAcgcAGGCCUCa -3'
miRNA:   3'- cUGACCAUUGGc---GCGUuu-UCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 28712 0.72 0.52819
Target:  5'- aGCUGGgaGCCGCGCc--GGACCUgGa -3'
miRNA:   3'- cUGACCauUGGCGCGuuuUCUGGGgC- -5'
19098 3' -53.3 NC_004684.1 + 29026 0.74 0.41744
Target:  5'- gGACUGGUGACCGCGCccucguuGAgCuuGg -3'
miRNA:   3'- -CUGACCAUUGGCGCGuuuu---CUgGggC- -5'
19098 3' -53.3 NC_004684.1 + 29140 0.74 0.402522
Target:  5'- aGCUGGUGgugccgacgcaguucGCCGCGCAGcAGuuCCCGa -3'
miRNA:   3'- cUGACCAU---------------UGGCGCGUUuUCugGGGC- -5'
19098 3' -53.3 NC_004684.1 + 31097 0.74 0.435584
Target:  5'- gGGCUGGcaggacGCCGCGCAggcgcugGAGGACCuuGg -3'
miRNA:   3'- -CUGACCau----UGGCGCGU-------UUUCUGGggC- -5'
19098 3' -53.3 NC_004684.1 + 31174 0.66 0.858983
Target:  5'- uGCUGGgccaGAUCGgGCA--AGGCCUCGu -3'
miRNA:   3'- cUGACCa---UUGGCgCGUuuUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 33297 0.67 0.80537
Target:  5'- --gUGGUGcUCGCGCGGGuGGCCUCGc -3'
miRNA:   3'- cugACCAUuGGCGCGUUUuCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 33764 0.66 0.866332
Target:  5'- uGACgaGGUAGCCgcccgacgauccgGCGCugccuGGCCCCa -3'
miRNA:   3'- -CUGa-CCAUUGG-------------CGCGuuuu-CUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 36857 0.67 0.783959
Target:  5'- cGACUGGUcggAGCCGUcgGCGGugaacuucaccGACCCCa -3'
miRNA:   3'- -CUGACCA---UUGGCG--CGUUuu---------CUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 39047 0.74 0.426932
Target:  5'- aGAC-GGUGGCCugcugguuGCGCuu-GGACCCCGg -3'
miRNA:   3'- -CUGaCCAUUGG--------CGCGuuuUCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.