miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19098 3' -53.3 NC_004684.1 + 443 0.71 0.582111
Target:  5'- cGGCUGGggcgaGAUCGCGCcGGAGGCCuucgCCGa -3'
miRNA:   3'- -CUGACCa----UUGGCGCGuUUUCUGG----GGC- -5'
19098 3' -53.3 NC_004684.1 + 1460 0.67 0.824075
Target:  5'- -cCUGGUcgaGACCGgGCcGGAcGugCCCGg -3'
miRNA:   3'- cuGACCA---UUGGCgCGuUUU-CugGGGC- -5'
19098 3' -53.3 NC_004684.1 + 5049 0.7 0.615024
Target:  5'- aGGCUGGcgcgcGCUGUGCuGGAGGCCuCCGg -3'
miRNA:   3'- -CUGACCau---UGGCGCGuUUUCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 5319 0.66 0.830434
Target:  5'- cGCUGGcGACCGUGCAGcaguggguggcgguGGGcugacaugcccACCCCGc -3'
miRNA:   3'- cUGACCaUUGGCGCGUU--------------UUC-----------UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 5785 0.66 0.841971
Target:  5'- uGCgUGGUGugCGgGCGGGAcGCCUCGa -3'
miRNA:   3'- cUG-ACCAUugGCgCGUUUUcUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 5922 0.7 0.626037
Target:  5'- cGACcGGcUGGCCGCGCu---GGCCaCCGg -3'
miRNA:   3'- -CUGaCC-AUUGGCGCGuuuuCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 6075 0.7 0.659069
Target:  5'- cGCUGGUAGCCGaUGCcGGGGgcgGCCUCGu -3'
miRNA:   3'- cUGACCAUUGGC-GCGuUUUC---UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 6835 0.66 0.867137
Target:  5'- aGCUGGccuACgGCGCGAAGGGCgacgCCGu -3'
miRNA:   3'- cUGACCau-UGgCGCGUUUUCUGg---GGC- -5'
19098 3' -53.3 NC_004684.1 + 7066 0.69 0.69296
Target:  5'- ---cGGUGAUCGCGCucgaacgcauugccGAGGCCCUGg -3'
miRNA:   3'- cugaCCAUUGGCGCGuu------------UUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 7510 0.71 0.560362
Target:  5'- cGCUGGccGCCGCGCGcguGACCCg- -3'
miRNA:   3'- cUGACCauUGGCGCGUuuuCUGGGgc -5'
19098 3' -53.3 NC_004684.1 + 7741 0.66 0.836691
Target:  5'- cGACUGGcgcgcaugggggaccUGACCGgGCc---GACCCCc -3'
miRNA:   3'- -CUGACC---------------AUUGGCgCGuuuuCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 10018 1.09 0.002181
Target:  5'- cGACUGGUAACCGCGCAAAAGACCCCGc -3'
miRNA:   3'- -CUGACCAUUGGCGCGUUUUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 11775 0.66 0.867137
Target:  5'- gGugUGGUGGCCcCGUggGccgaccAGGCCaCCGu -3'
miRNA:   3'- -CugACCAUUGGcGCGuuU------UCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 13120 0.67 0.785939
Target:  5'- cGGCcgGGUGGCgGCGCuggcuGAGGAgcugUCCCGg -3'
miRNA:   3'- -CUGa-CCAUUGgCGCGu----UUUCU----GGGGC- -5'
19098 3' -53.3 NC_004684.1 + 13684 0.66 0.875046
Target:  5'- gGACaUGGUGGCCGguucgggcaCGCcGAAGAucaUCCCGa -3'
miRNA:   3'- -CUG-ACCAUUGGC---------GCGuUUUCU---GGGGC- -5'
19098 3' -53.3 NC_004684.1 + 14087 0.68 0.755617
Target:  5'- cGACcagGGUGACCGgGUGGuguGGcucaGCCCCGg -3'
miRNA:   3'- -CUGa--CCAUUGGCgCGUUu--UC----UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 14353 0.73 0.456158
Target:  5'- uGCUGGgcACCGCGCAGGuGuACgCCGa -3'
miRNA:   3'- cUGACCauUGGCGCGUUUuC-UGgGGC- -5'
19098 3' -53.3 NC_004684.1 + 14378 0.68 0.759732
Target:  5'- nGACUGGcUGACCGacaccgggccgucgcCGCAGGAGAUgCUGc -3'
miRNA:   3'- -CUGACC-AUUGGC---------------GCGUUUUCUGgGGC- -5'
19098 3' -53.3 NC_004684.1 + 15379 0.68 0.755617
Target:  5'- cGCUGGUGAUCG-GCuacGAGGCCgCCa -3'
miRNA:   3'- cUGACCAUUGGCgCGuu-UUCUGG-GGc -5'
19098 3' -53.3 NC_004684.1 + 19125 0.66 0.850592
Target:  5'- cGCaUGGUGGCCGaCGaCAAcGGAcgccuCCCCGg -3'
miRNA:   3'- cUG-ACCAUUGGC-GC-GUUuUCU-----GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.