miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19098 3' -53.3 NC_004684.1 + 56851 0.67 0.785939
Target:  5'- aGCUGGUGgagcACCacgaggucaGCGCAcccuGGCCCCGc -3'
miRNA:   3'- cUGACCAU----UGG---------CGCGUuuu-CUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 57599 0.69 0.720962
Target:  5'- cGACggUGGUGACCGUGCAcGAGcgguacggccagccACCCgGu -3'
miRNA:   3'- -CUG--ACCAUUGGCGCGUuUUC--------------UGGGgC- -5'
19098 3' -53.3 NC_004684.1 + 56947 0.69 0.724158
Target:  5'- gGACUGGUGcACgGCGCAcagcguGGAGGCCaaCCu -3'
miRNA:   3'- -CUGACCAU-UGgCGCGU------UUUCUGG--GGc -5'
19098 3' -53.3 NC_004684.1 + 46876 0.69 0.724158
Target:  5'- --gUGGUGuauCCGCGCGAcaugucagccGAGcCCCCGc -3'
miRNA:   3'- cugACCAUu--GGCGCGUU----------UUCuGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 57325 0.68 0.745241
Target:  5'- cGACUGGccguaGGCCacacaGaCAAAAGACCCCGc -3'
miRNA:   3'- -CUGACCa----UUGGcg---C-GUUUUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 15379 0.68 0.755617
Target:  5'- cGCUGGUGAUCG-GCuacGAGGCCgCCa -3'
miRNA:   3'- cUGACCAUUGGCgCGuu-UUCUGG-GGc -5'
19098 3' -53.3 NC_004684.1 + 28128 0.68 0.755617
Target:  5'- uGCUGGUGGCCugcaCGCAcgcAGGCCUCa -3'
miRNA:   3'- cUGACCAUUGGc---GCGUuu-UCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 27840 0.67 0.784949
Target:  5'- uGCUGGgcACCGagcgcgcugugcaCGCAGGAGugCCgGu -3'
miRNA:   3'- cUGACCauUGGC-------------GCGUUUUCugGGgC- -5'
19098 3' -53.3 NC_004684.1 + 55644 0.67 0.785939
Target:  5'- cGGCUGGcGugCGUGgAGGAGGgCCUGg -3'
miRNA:   3'- -CUGACCaUugGCGCgUUUUCUgGGGC- -5'
19098 3' -53.3 NC_004684.1 + 61693 0.69 0.713473
Target:  5'- uGGCgucGGU-GCCGUggGCAGGccGGGCCCCGg -3'
miRNA:   3'- -CUGa--CCAuUGGCG--CGUUU--UCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 42209 0.69 0.702708
Target:  5'- aGCUGGUGGCCGaCGU----GGCCgCCGg -3'
miRNA:   3'- cUGACCAUUGGC-GCGuuuuCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 47246 0.7 0.659069
Target:  5'- gGGCgcgagGGUAgcgGCUGCGCGGAacAGGCCCUc -3'
miRNA:   3'- -CUGa----CCAU---UGGCGCGUUU--UCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 29140 0.74 0.402522
Target:  5'- aGCUGGUGgugccgacgcaguucGCCGCGCAGcAGuuCCCGa -3'
miRNA:   3'- cUGACCAU---------------UGGCGCGUUuUCugGGGC- -5'
19098 3' -53.3 NC_004684.1 + 31097 0.74 0.435584
Target:  5'- gGGCUGGcaggacGCCGCGCAggcgcugGAGGACCuuGg -3'
miRNA:   3'- -CUGACCau----UGGCGCGU-------UUUCUGGggC- -5'
19098 3' -53.3 NC_004684.1 + 57893 0.73 0.476228
Target:  5'- uGGCUGGUGGCCGgGCuGAAgguggccgggcuGACCgCCGa -3'
miRNA:   3'- -CUGACCAUUGGCgCGuUUU------------CUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 7510 0.71 0.560362
Target:  5'- cGCUGGccGCCGCGCGcguGACCCg- -3'
miRNA:   3'- cUGACCauUGGCGCGUuuuCUGGGgc -5'
19098 3' -53.3 NC_004684.1 + 25252 0.71 0.600731
Target:  5'- cGCUGGUGaaggcgcuggagaaGCUGCGCAccAAGGGCCuuCCGg -3'
miRNA:   3'- cUGACCAU--------------UGGCGCGU--UUUCUGG--GGC- -5'
19098 3' -53.3 NC_004684.1 + 5922 0.7 0.626037
Target:  5'- cGACcGGcUGGCCGCGCu---GGCCaCCGg -3'
miRNA:   3'- -CUGaCC-AUUGGCGCGuuuuCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 20351 0.7 0.635954
Target:  5'- ---cGGUGcaccgucACCGCGCAGGccACCCCGa -3'
miRNA:   3'- cugaCCAU-------UGGCGCGUUUucUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 6075 0.7 0.659069
Target:  5'- cGCUGGUAGCCGaUGCcGGGGgcgGCCUCGu -3'
miRNA:   3'- cUGACCAUUGGC-GCGuUUUC---UGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.