miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19098 3' -53.3 NC_004684.1 + 10018 1.09 0.002181
Target:  5'- cGACUGGUAACCGCGCAAAAGACCCCGc -3'
miRNA:   3'- -CUGACCAUUGGCGCGUUUUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 58632 0.77 0.270314
Target:  5'- cGGCUGGU-GCCGCGCu--GGGCCUCu -3'
miRNA:   3'- -CUGACCAuUGGCGCGuuuUCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 51650 0.74 0.398846
Target:  5'- aGCUGcUGGCCGUGCAcGAGGCCCUu -3'
miRNA:   3'- cUGACcAUUGGCGCGUuUUCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 29140 0.74 0.402522
Target:  5'- aGCUGGUGgugccgacgcaguucGCCGCGCAGcAGuuCCCGa -3'
miRNA:   3'- cUGACCAU---------------UGGCGCGUUuUCugGGGC- -5'
19098 3' -53.3 NC_004684.1 + 29026 0.74 0.41744
Target:  5'- gGACUGGUGACCGCGCccucguuGAgCuuGg -3'
miRNA:   3'- -CUGACCAUUGGCGCGuuuu---CUgGggC- -5'
19098 3' -53.3 NC_004684.1 + 39047 0.74 0.426932
Target:  5'- aGAC-GGUGGCCugcugguuGCGCuu-GGACCCCGg -3'
miRNA:   3'- -CUGaCCAUUGG--------CGCGuuuUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 31097 0.74 0.435584
Target:  5'- gGGCUGGcaggacGCCGCGCAggcgcugGAGGACCuuGg -3'
miRNA:   3'- -CUGACCau----UGGCGCGU-------UUUCUGGggC- -5'
19098 3' -53.3 NC_004684.1 + 14353 0.73 0.456158
Target:  5'- uGCUGGgcACCGCGCAGGuGuACgCCGa -3'
miRNA:   3'- cUGACCauUGGCGCGUUUuC-UGgGGC- -5'
19098 3' -53.3 NC_004684.1 + 57893 0.73 0.476228
Target:  5'- uGGCUGGUGGCCGgGCuGAAgguggccgggcuGACCgCCGa -3'
miRNA:   3'- -CUGACCAUUGGCgCGuUUU------------CUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 21332 0.72 0.496728
Target:  5'- -cCUGGUccAGCCGCGCGGcAAGACCgUGc -3'
miRNA:   3'- cuGACCA--UUGGCGCGUU-UUCUGGgGC- -5'
19098 3' -53.3 NC_004684.1 + 28712 0.72 0.52819
Target:  5'- aGCUGGgaGCCGCGCc--GGACCUgGa -3'
miRNA:   3'- cUGACCauUGGCGCGuuuUCUGGGgC- -5'
19098 3' -53.3 NC_004684.1 + 7510 0.71 0.560362
Target:  5'- cGCUGGccGCCGCGCGcguGACCCg- -3'
miRNA:   3'- cUGACCauUGGCGCGUuuuCUGGGgc -5'
19098 3' -53.3 NC_004684.1 + 443 0.71 0.582111
Target:  5'- cGGCUGGggcgaGAUCGCGCcGGAGGCCuucgCCGa -3'
miRNA:   3'- -CUGACCa----UUGGCGCGuUUUCUGG----GGC- -5'
19098 3' -53.3 NC_004684.1 + 25252 0.71 0.600731
Target:  5'- cGCUGGUGaaggcgcuggagaaGCUGCGCAccAAGGGCCuuCCGg -3'
miRNA:   3'- cUGACCAU--------------UGGCGCGU--UUUCUGG--GGC- -5'
19098 3' -53.3 NC_004684.1 + 5049 0.7 0.615024
Target:  5'- aGGCUGGcgcgcGCUGUGCuGGAGGCCuCCGg -3'
miRNA:   3'- -CUGACCau---UGGCGCGuUUUCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 27760 0.7 0.615024
Target:  5'- ---aGGUGACCGUGCcgcgcGACCCCc -3'
miRNA:   3'- cugaCCAUUGGCGCGuuuu-CUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 5922 0.7 0.626037
Target:  5'- cGACcGGcUGGCCGCGCu---GGCCaCCGg -3'
miRNA:   3'- -CUGaCC-AUUGGCGCGuuuuCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 48505 0.7 0.626037
Target:  5'- cGACgUGGaggAGCCGCGCu--GGugCCCu -3'
miRNA:   3'- -CUG-ACCa--UUGGCGCGuuuUCugGGGc -5'
19098 3' -53.3 NC_004684.1 + 20351 0.7 0.635954
Target:  5'- ---cGGUGcaccgucACCGCGCAGGccACCCCGa -3'
miRNA:   3'- cugaCCAU-------UGGCGCGUUUucUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 47246 0.7 0.659069
Target:  5'- gGGCgcgagGGUAgcgGCUGCGCGGAacAGGCCCUc -3'
miRNA:   3'- -CUGa----CCAU---UGGCGCGUUU--UCUGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.