miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 24775 0.67 0.579872
Target:  5'- aCCGgCAcCGGGCCGcuggUCGAUacggcCAAGGCGg -3'
miRNA:   3'- cGGCgGU-GCCCGGC----AGCUA-----GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 28086 0.68 0.56931
Target:  5'- gGCCGCCGCgcgacccgcaccGGGUgGUgCGGUuCGAGGCc -3'
miRNA:   3'- -CGGCGGUG------------CCCGgCA-GCUA-GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 7971 0.68 0.56931
Target:  5'- gGCCGCCAgGcGGCCGU-GcgCAAcaccuGCAa -3'
miRNA:   3'- -CGGCGGUgC-CCGGCAgCuaGUUu----CGU- -5'
19100 5' -57.3 NC_004684.1 + 39883 0.68 0.558796
Target:  5'- aGCuCGCC-CaGGCCGUCGGUguAgucGGCGg -3'
miRNA:   3'- -CG-GCGGuGcCCGGCAGCUAguU---UCGU- -5'
19100 5' -57.3 NC_004684.1 + 26315 0.68 0.558796
Target:  5'- gGCCagGCCGcCGGGCCGcCGAUugcCGAcGCGg -3'
miRNA:   3'- -CGG--CGGU-GCCCGGCaGCUA---GUUuCGU- -5'
19100 5' -57.3 NC_004684.1 + 53629 0.68 0.557748
Target:  5'- gGUCGCCugGagcgccaGGCCGUUGAgcacCGAGGUg -3'
miRNA:   3'- -CGGCGGugC-------CCGGCAGCUa---GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 3519 0.68 0.548337
Target:  5'- aUCGCCGacgggUGGGCCGaccuggCGGUgCAAGGCAa -3'
miRNA:   3'- cGGCGGU-----GCCCGGCa-----GCUA-GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 51119 0.68 0.537941
Target:  5'- cGCCGCguCGGGCCcGgcgCGAaCAccGGGCGa -3'
miRNA:   3'- -CGGCGguGCCCGG-Ca--GCUaGU--UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3799 0.68 0.537941
Target:  5'- cGCCGCCGCcuuGGCgGUCaagGAUCugcuGGGCGc -3'
miRNA:   3'- -CGGCGGUGc--CCGgCAG---CUAGu---UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 52313 0.68 0.536905
Target:  5'- gGCCaCCGCGccgauaaGGCCGUCGAccUCAuccGGCGu -3'
miRNA:   3'- -CGGcGGUGC-------CCGGCAGCU--AGUu--UCGU- -5'
19100 5' -57.3 NC_004684.1 + 34126 0.68 0.527613
Target:  5'- uGCuCGUCGCGGuGCUGUUGAgCGAcAGCAc -3'
miRNA:   3'- -CG-GCGGUGCC-CGGCAGCUaGUU-UCGU- -5'
19100 5' -57.3 NC_004684.1 + 56036 0.68 0.527613
Target:  5'- gGCCaccaccguggGCCugGaGGCCGcCG-UCAAGGCGc -3'
miRNA:   3'- -CGG----------CGGugC-CCGGCaGCuAGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 58305 0.68 0.51736
Target:  5'- -gCGUCACGGGCCucGUCGGUCuu-GUc -3'
miRNA:   3'- cgGCGGUGCCCGG--CAGCUAGuuuCGu -5'
19100 5' -57.3 NC_004684.1 + 13282 0.68 0.51736
Target:  5'- gGCCGCCGguGGCUGgugCGcgccGUCGGAGCAg -3'
miRNA:   3'- -CGGCGGUgcCCGGCa--GC----UAGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 60540 0.69 0.507187
Target:  5'- cGCCGCgCcCGGuGCCGUCGAcacccucgaacUCGAccAGCu -3'
miRNA:   3'- -CGGCG-GuGCC-CGGCAGCU-----------AGUU--UCGu -5'
19100 5' -57.3 NC_004684.1 + 11225 0.69 0.507187
Target:  5'- cGCCGCCGuCGucGCCGUCGucggcCAGGGCc -3'
miRNA:   3'- -CGGCGGU-GCc-CGGCAGCua---GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 19329 0.69 0.497101
Target:  5'- cGCCGCCGcCGuGGCCGagCGG--GAGGCGc -3'
miRNA:   3'- -CGGCGGU-GC-CCGGCa-GCUagUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 18075 0.69 0.497101
Target:  5'- gGCCGCCgACGGGUCGauccuggaCGG-CAAGGCc -3'
miRNA:   3'- -CGGCGG-UGCCCGGCa-------GCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 20802 0.69 0.497101
Target:  5'- cGCCGCCGuCGccGCCGUCGAgcgCGAcugggaauccGGCAc -3'
miRNA:   3'- -CGGCGGU-GCc-CGGCAGCUa--GUU----------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 61315 0.69 0.477206
Target:  5'- aCCGCCGcCGGGCCGcCGccCucGGCGg -3'
miRNA:   3'- cGGCGGU-GCCCGGCaGCuaGuuUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.