miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 13282 0.68 0.51736
Target:  5'- gGCCGCCGguGGCUGgugCGcgccGUCGGAGCAg -3'
miRNA:   3'- -CGGCGGUgcCCGGCa--GC----UAGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 13552 0.67 0.633136
Target:  5'- -gCGCCugGcGGCCaUCGGcuacugcgUCGAGGCGg -3'
miRNA:   3'- cgGCGGugC-CCGGcAGCU--------AGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 15514 0.7 0.448127
Target:  5'- gGCCGCC-CgGGGCCGggCGcUgGAGGCGc -3'
miRNA:   3'- -CGGCGGuG-CCCGGCa-GCuAgUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 18075 0.69 0.497101
Target:  5'- gGCCGCCgACGGGUCGauccuggaCGG-CAAGGCc -3'
miRNA:   3'- -CGGCGG-UGCCCGGCa-------GCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 18672 0.69 0.467407
Target:  5'- uGCCGCCGCuGGGCgCGaCGGuaaccaUCAGccAGCAg -3'
miRNA:   3'- -CGGCGGUG-CCCG-GCaGCU------AGUU--UCGU- -5'
19100 5' -57.3 NC_004684.1 + 19329 0.69 0.497101
Target:  5'- cGCCGCCGcCGuGGCCGagCGG--GAGGCGc -3'
miRNA:   3'- -CGGCGGU-GC-CCGGCa-GCUagUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 20802 0.69 0.497101
Target:  5'- cGCCGCCGuCGccGCCGUCGAgcgCGAcugggaauccGGCAc -3'
miRNA:   3'- -CGGCGGU-GCc-CGGCAGCUa--GUU----------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 21567 0.66 0.643821
Target:  5'- aCCGCCGa-GGCCGUCaccgGGUCAAugccGCAc -3'
miRNA:   3'- cGGCGGUgcCCGGCAG----CUAGUUu---CGU- -5'
19100 5' -57.3 NC_004684.1 + 24775 0.67 0.579872
Target:  5'- aCCGgCAcCGGGCCGcuggUCGAUacggcCAAGGCGg -3'
miRNA:   3'- cGGCgGU-GCCCGGC----AGCUA-----GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 24869 0.72 0.326861
Target:  5'- cGCCGaCCACGGcggugagcgcGCCGUUGAUCGcguuGGCc -3'
miRNA:   3'- -CGGC-GGUGCC----------CGGCAGCUAGUu---UCGu -5'
19100 5' -57.3 NC_004684.1 + 26315 0.68 0.558796
Target:  5'- gGCCagGCCGcCGGGCCGcCGAUugcCGAcGCGg -3'
miRNA:   3'- -CGG--CGGU-GCCCGGCaGCUA---GUUuCGU- -5'
19100 5' -57.3 NC_004684.1 + 26808 0.73 0.29627
Target:  5'- -aCGCCACGGGCCgGUUGAUgAAcgacaccAGCGc -3'
miRNA:   3'- cgGCGGUGCCCGG-CAGCUAgUU-------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 26949 0.67 0.62245
Target:  5'- gGCCGCCugGGcaCCGcUGAcCAAGGCc -3'
miRNA:   3'- -CGGCGGugCCc-GGCaGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 26976 0.69 0.467407
Target:  5'- cGCCGCCAUccaGGCCGgugCGAgCGcGGCGg -3'
miRNA:   3'- -CGGCGGUGc--CCGGCa--GCUaGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 28086 0.68 0.56931
Target:  5'- gGCCGCCGCgcgacccgcaccGGGUgGUgCGGUuCGAGGCc -3'
miRNA:   3'- -CGGCGGUG------------CCCGgCA-GCUA-GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 28558 0.69 0.467407
Target:  5'- cGCCaggGCCACcaGGCCGUCGggCAccgccAGGCGg -3'
miRNA:   3'- -CGG---CGGUGc-CCGGCAGCuaGU-----UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 33884 0.67 0.602176
Target:  5'- aGCCGCCACcgcccgcgaguacaGGGCCGcCGccgcGUCcaccgcagccccgccGAGGCAg -3'
miRNA:   3'- -CGGCGGUG--------------CCCGGCaGC----UAG---------------UUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 34126 0.68 0.527613
Target:  5'- uGCuCGUCGCGGuGCUGUUGAgCGAcAGCAc -3'
miRNA:   3'- -CG-GCGGUGCC-CGGCAGCUaGUU-UCGU- -5'
19100 5' -57.3 NC_004684.1 + 34184 0.66 0.665151
Target:  5'- gGCCGCC--GGGCUGUCcGUCGccauGGCc -3'
miRNA:   3'- -CGGCGGugCCCGGCAGcUAGUu---UCGu -5'
19100 5' -57.3 NC_004684.1 + 36761 0.66 0.654495
Target:  5'- cGCCGCCA-GGGCCGcgccCGGUgcCGAcGCu -3'
miRNA:   3'- -CGGCGGUgCCCGGCa---GCUA--GUUuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.