miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 245 0.73 0.296989
Target:  5'- cGCCGCCACGaucaucgugcaGGCCGaCGG-CGAGGCc -3'
miRNA:   3'- -CGGCGGUGC-----------CCGGCaGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 518 0.66 0.666215
Target:  5'- gGUCGCCAcCGGcGCUGacgugcuggccagcgCGGUCGAGGCc -3'
miRNA:   3'- -CGGCGGU-GCC-CGGCa--------------GCUAGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 732 0.67 0.601111
Target:  5'- aCCGCCGgugacCGGGCCGcCGc-CGAGGCc -3'
miRNA:   3'- cGGCGGU-----GCCCGGCaGCuaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 862 0.67 0.600046
Target:  5'- aCCGCCGugcccgcCGGGCCG-CGcUgAAGGCGg -3'
miRNA:   3'- cGGCGGU-------GCCCGGCaGCuAgUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3519 0.68 0.548337
Target:  5'- aUCGCCGacgggUGGGCCGaccuggCGGUgCAAGGCAa -3'
miRNA:   3'- cGGCGGU-----GCCCGGCa-----GCUA-GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3602 0.66 0.675777
Target:  5'- cGUCGCgCACuGGGCCGcCGAacacgaguggcCGAAGCGc -3'
miRNA:   3'- -CGGCG-GUG-CCCGGCaGCUa----------GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3652 0.67 0.633136
Target:  5'- gGCCGCC-CGGuGCCG--GGUCAucGUAc -3'
miRNA:   3'- -CGGCGGuGCC-CGGCagCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 3710 0.7 0.438654
Target:  5'- cGCCGCCGCGcuGGCCGgu-AUCAAcGCu -3'
miRNA:   3'- -CGGCGGUGC--CCGGCagcUAGUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 3799 0.68 0.537941
Target:  5'- cGCCGCCGCcuuGGCgGUCaagGAUCugcuGGGCGc -3'
miRNA:   3'- -CGGCGGUGc--CCGgCAG---CUAGu---UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 4013 0.66 0.686364
Target:  5'- cGCCGCCAuCGgcuggcgcgucGGCCGcUCGGUgCGcuGGGCGg -3'
miRNA:   3'- -CGGCGGU-GC-----------CCGGC-AGCUA-GU--UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 6745 0.67 0.633136
Target:  5'- gGCUgGCC-CGGaGCCGUCGGgugcaCGAAGUg -3'
miRNA:   3'- -CGG-CGGuGCC-CGGCAGCUa----GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 7331 0.66 0.654495
Target:  5'- gGCCGCC--GGGCCGcgcgccaCGAgugCGAGGCc -3'
miRNA:   3'- -CGGCGGugCCCGGCa------GCUa--GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 7971 0.68 0.56931
Target:  5'- gGCCGCCAgGcGGCCGU-GcgCAAcaccuGCAa -3'
miRNA:   3'- -CGGCGGUgC-CCGGCAgCuaGUUu----CGU- -5'
19100 5' -57.3 NC_004684.1 + 8779 1.1 0.000724
Target:  5'- aGCCGCCACGGGCCGUCGAUCAAAGCAc -3'
miRNA:   3'- -CGGCGGUGCCCGGCAGCUAGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 10160 0.67 0.590475
Target:  5'- aGCCGCCGCuGGCCaccgCGcUCGAGGa- -3'
miRNA:   3'- -CGGCGGUGcCCGGca--GCuAGUUUCgu -5'
19100 5' -57.3 NC_004684.1 + 10499 0.67 0.601111
Target:  5'- gGCCGaCgCACuGGGCCGccgaCGGUCAgcGCGc -3'
miRNA:   3'- -CGGC-G-GUG-CCCGGCa---GCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 11225 0.69 0.507187
Target:  5'- cGCCGCCGuCGucGCCGUCGucggcCAGGGCc -3'
miRNA:   3'- -CGGCGGU-GCc-CGGCAGCua---GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 12450 0.66 0.643821
Target:  5'- --gGCUGCGGGCCGgggagcaaUCGAcCGAGGUAc -3'
miRNA:   3'- cggCGGUGCCCGGC--------AGCUaGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 12905 0.69 0.476221
Target:  5'- cGCCGCCAgCGGugccggugcGCCGUCGGcCAAcuucgccgccgucGGCAc -3'
miRNA:   3'- -CGGCGGU-GCC---------CGGCAGCUaGUU-------------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 13090 0.67 0.62245
Target:  5'- aGCCGCCAaggGGGCCGaugCGcgCAcccccGGCc -3'
miRNA:   3'- -CGGCGGUg--CCCGGCa--GCuaGUu----UCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.