miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 8779 1.1 0.000724
Target:  5'- aGCCGCCACGGGCCGUCGAUCAAAGCAc -3'
miRNA:   3'- -CGGCGGUGCCCGGCAGCUAGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 59857 0.82 0.072786
Target:  5'- cGCCGCCACGgcGGCCagGUCGGUCcGGGCAg -3'
miRNA:   3'- -CGGCGGUGC--CCGG--CAGCUAGuUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 67003 0.74 0.262687
Target:  5'- cCCGUaCGCGGgGCCGUCGGUCucGGCc -3'
miRNA:   3'- cGGCG-GUGCC-CGGCAGCUAGuuUCGu -5'
19100 5' -57.3 NC_004684.1 + 26808 0.73 0.29627
Target:  5'- -aCGCCACGGGCCgGUUGAUgAAcgacaccAGCGc -3'
miRNA:   3'- cgGCGGUGCCCGG-CAGCUAgUU-------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 65581 0.73 0.296989
Target:  5'- aGCCGCCAU-GGCC-UCGGUCAuGAGCc -3'
miRNA:   3'- -CGGCGGUGcCCGGcAGCUAGU-UUCGu -5'
19100 5' -57.3 NC_004684.1 + 245 0.73 0.296989
Target:  5'- cGCCGCCACGaucaucgugcaGGCCGaCGG-CGAGGCc -3'
miRNA:   3'- -CGGCGGUGC-----------CCGGCaGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 55305 0.73 0.304253
Target:  5'- gGCCGCCgcGCGGGCCagcaccucGUCGcgCucGGCGg -3'
miRNA:   3'- -CGGCGG--UGCCCGG--------CAGCuaGuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 40050 0.72 0.318429
Target:  5'- uGCCGgugcCCACGGcgauaccGCCGUCG-UCAAAGCu -3'
miRNA:   3'- -CGGC----GGUGCC-------CGGCAGCuAGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 24869 0.72 0.326861
Target:  5'- cGCCGaCCACGGcggugagcgcGCCGUUGAUCGcguuGGCc -3'
miRNA:   3'- -CGGC-GGUGCC----------CGGCAGCUAGUu---UCGu -5'
19100 5' -57.3 NC_004684.1 + 56600 0.72 0.333881
Target:  5'- uGCCGCUACGGugccgacGCCGUCGcggguGUCGcGGGCAc -3'
miRNA:   3'- -CGGCGGUGCC-------CGGCAGC-----UAGU-UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 66692 0.72 0.345827
Target:  5'- gGCCGuCCACcggcggcugaccucgGGGCCGagGAUCAGGcGCAc -3'
miRNA:   3'- -CGGC-GGUG---------------CCCGGCagCUAGUUU-CGU- -5'
19100 5' -57.3 NC_004684.1 + 39833 0.72 0.35069
Target:  5'- -aCGCCAcCGGGCCuccuaGUCGAUUAGcuccAGCAg -3'
miRNA:   3'- cgGCGGU-GCCCGG-----CAGCUAGUU----UCGU- -5'
19100 5' -57.3 NC_004684.1 + 65767 0.71 0.375728
Target:  5'- gGCCGCCGCGcGCCGgugggcgCGcgCAcGGCGa -3'
miRNA:   3'- -CGGCGGUGCcCGGCa------GCuaGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 39608 0.71 0.393077
Target:  5'- aCCGCCGCGcaCCGUCGggCGGGGUg -3'
miRNA:   3'- cGGCGGUGCccGGCAGCuaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 54578 0.71 0.393077
Target:  5'- aGCCGCCGuccuCGGGCgCGUCG-UC--GGCGg -3'
miRNA:   3'- -CGGCGGU----GCCCG-GCAGCuAGuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 66650 0.71 0.393077
Target:  5'- cGCCGCCA-GGG-CGUCGGugucgUCGGGGUAg -3'
miRNA:   3'- -CGGCGGUgCCCgGCAGCU-----AGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 65067 0.71 0.401053
Target:  5'- cGCCGCCaguucguccugcGCGGugaucauGCCGUCGAgCAGGGUg -3'
miRNA:   3'- -CGGCGG------------UGCC-------CGGCAGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 58685 0.7 0.420057
Target:  5'- cGCCGCCAUGGaGUccuCGUCG-UCGuAGGCGg -3'
miRNA:   3'- -CGGCGGUGCC-CG---GCAGCuAGU-UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 40631 0.7 0.429296
Target:  5'- aCCGCCGCGcGGCCGaCGAacuUgGGGGCc -3'
miRNA:   3'- cGGCGGUGC-CCGGCaGCU---AgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 3710 0.7 0.438654
Target:  5'- cGCCGCCGCGcuGGCCGgu-AUCAAcGCu -3'
miRNA:   3'- -CGGCGGUGC--CCGGCagcUAGUUuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.