miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 39883 0.68 0.558796
Target:  5'- aGCuCGCC-CaGGCCGUCGGUguAgucGGCGg -3'
miRNA:   3'- -CG-GCGGuGcCCGGCAGCUAguU---UCGU- -5'
19100 5' -57.3 NC_004684.1 + 12905 0.69 0.476221
Target:  5'- cGCCGCCAgCGGugccggugcGCCGUCGGcCAAcuucgccgccgucGGCAc -3'
miRNA:   3'- -CGGCGGU-GCC---------CGGCAGCUaGUU-------------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 61315 0.69 0.477206
Target:  5'- aCCGCCGcCGGGCCGcCGccCucGGCGg -3'
miRNA:   3'- cGGCGGU-GCCCGGCaGCuaGuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 19329 0.69 0.497101
Target:  5'- cGCCGCCGcCGuGGCCGagCGG--GAGGCGc -3'
miRNA:   3'- -CGGCGGU-GC-CCGGCa-GCUagUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 60540 0.69 0.507187
Target:  5'- cGCCGCgCcCGGuGCCGUCGAcacccucgaacUCGAccAGCu -3'
miRNA:   3'- -CGGCG-GuGCC-CGGCAGCU-----------AGUU--UCGu -5'
19100 5' -57.3 NC_004684.1 + 13282 0.68 0.51736
Target:  5'- gGCCGCCGguGGCUGgugCGcgccGUCGGAGCAg -3'
miRNA:   3'- -CGGCGGUgcCCGGCa--GC----UAGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 56036 0.68 0.527613
Target:  5'- gGCCaccaccguggGCCugGaGGCCGcCG-UCAAGGCGc -3'
miRNA:   3'- -CGG----------CGGugC-CCGGCaGCuAGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3799 0.68 0.537941
Target:  5'- cGCCGCCGCcuuGGCgGUCaagGAUCugcuGGGCGc -3'
miRNA:   3'- -CGGCGGUGc--CCGgCAG---CUAGu---UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3519 0.68 0.548337
Target:  5'- aUCGCCGacgggUGGGCCGaccuggCGGUgCAAGGCAa -3'
miRNA:   3'- cGGCGGU-----GCCCGGCa-----GCUA-GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 26976 0.69 0.467407
Target:  5'- cGCCGCCAUccaGGCCGgugCGAgCGcGGCGg -3'
miRNA:   3'- -CGGCGGUGc--CCGGCa--GCUaGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 18672 0.69 0.467407
Target:  5'- uGCCGCCGCuGGGCgCGaCGGuaaccaUCAGccAGCAg -3'
miRNA:   3'- -CGGCGGUG-CCCG-GCaGCU------AGUU--UCGU- -5'
19100 5' -57.3 NC_004684.1 + 37162 0.69 0.467407
Target:  5'- aGCgCGCCGaGGGCCacGUCGcgCcGAGCAu -3'
miRNA:   3'- -CG-GCGGUgCCCGG--CAGCuaGuUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 26808 0.73 0.29627
Target:  5'- -aCGCCACGGGCCgGUUGAUgAAcgacaccAGCGc -3'
miRNA:   3'- cgGCGGUGCCCGG-CAGCUAgUU-------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 65581 0.73 0.296989
Target:  5'- aGCCGCCAU-GGCC-UCGGUCAuGAGCc -3'
miRNA:   3'- -CGGCGGUGcCCGGcAGCUAGU-UUCGu -5'
19100 5' -57.3 NC_004684.1 + 65767 0.71 0.375728
Target:  5'- gGCCGCCGCGcGCCGgugggcgCGcgCAcGGCGa -3'
miRNA:   3'- -CGGCGGUGCcCGGCa------GCuaGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 65067 0.71 0.401053
Target:  5'- cGCCGCCaguucguccugcGCGGugaucauGCCGUCGAgCAGGGUg -3'
miRNA:   3'- -CGGCGG------------UGCC-------CGGCAGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 40631 0.7 0.429296
Target:  5'- aCCGCCGCGcGGCCGaCGAacuUgGGGGCc -3'
miRNA:   3'- cGGCGGUGC-CCGGCaGCU---AgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 3710 0.7 0.438654
Target:  5'- cGCCGCCGCGcuGGCCGgu-AUCAAcGCu -3'
miRNA:   3'- -CGGCGGUGC--CCGGCagcUAGUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 48811 0.7 0.438654
Target:  5'- gGCCGCCguucuccaACaGGCCGUCGAUgAuguacuccggGGGCGg -3'
miRNA:   3'- -CGGCGG--------UGcCCGGCAGCUAgU----------UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 15514 0.7 0.448127
Target:  5'- gGCCGCC-CgGGGCCGggCGcUgGAGGCGc -3'
miRNA:   3'- -CGGCGGuG-CCCGGCa-GCuAgUUUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.