miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19104 3' -51.7 NC_004684.1 + 8122 1.11 0.002044
Target:  5'- cGACAAGCAGACCCGCAAGCUCAAACGg -3'
miRNA:   3'- -CUGUUCGUCUGGGCGUUCGAGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 59237 0.77 0.350134
Target:  5'- uGACccGCAGACCCGCAcGCUCcAACu -3'
miRNA:   3'- -CUGuuCGUCUGGGCGUuCGAGuUUGc -5'
19104 3' -51.7 NC_004684.1 + 16067 0.76 0.385564
Target:  5'- aGCAAGCGuGGCCCGCcgguGAGC-CGAACGa -3'
miRNA:   3'- cUGUUCGU-CUGGGCG----UUCGaGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 31000 0.74 0.473396
Target:  5'- --gAGGUAGGCCCGCGAGCgugccuggaggUAGACGg -3'
miRNA:   3'- cugUUCGUCUGGGCGUUCGa----------GUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 57252 0.74 0.483776
Target:  5'- gGGCGGGCGGcaccgucgGCCCGCAcAGCUCGgccuguGACGg -3'
miRNA:   3'- -CUGUUCGUC--------UGGGCGU-UCGAGU------UUGC- -5'
19104 3' -51.7 NC_004684.1 + 5532 0.73 0.537181
Target:  5'- cGACGAGUGGuCCCGCcAGGCUguGACc -3'
miRNA:   3'- -CUGUUCGUCuGGGCG-UUCGAguUUGc -5'
19104 3' -51.7 NC_004684.1 + 62964 0.72 0.570193
Target:  5'- cGCcAGCAGGCCCGCGcguuGUUCcGGCGg -3'
miRNA:   3'- cUGuUCGUCUGGGCGUu---CGAGuUUGC- -5'
19104 3' -51.7 NC_004684.1 + 4825 0.72 0.614901
Target:  5'- gGACAAGCucGGCCUG-AAGCUgGAGCGu -3'
miRNA:   3'- -CUGUUCGu-CUGGGCgUUCGAgUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 43450 0.71 0.671053
Target:  5'- cGGCAGGCgGGugCCGCGcAGCUCcggGAAUGc -3'
miRNA:   3'- -CUGUUCG-UCugGGCGU-UCGAG---UUUGC- -5'
19104 3' -51.7 NC_004684.1 + 52431 0.71 0.671053
Target:  5'- cGCAAGCGGACCUcgGCucGGCUCG-GCGc -3'
miRNA:   3'- cUGUUCGUCUGGG--CGu-UCGAGUuUGC- -5'
19104 3' -51.7 NC_004684.1 + 65970 0.7 0.715347
Target:  5'- gGAC-AGCGGGuCgCGCAGGCUCAGcCGc -3'
miRNA:   3'- -CUGuUCGUCU-GgGCGUUCGAGUUuGC- -5'
19104 3' -51.7 NC_004684.1 + 57162 0.7 0.726235
Target:  5'- cGGCGguGGCcGACgCGCAcGCUCGGGCGc -3'
miRNA:   3'- -CUGU--UCGuCUGgGCGUuCGAGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 15571 0.7 0.726235
Target:  5'- cGAgAAGCuGACCCGCGAgaagggggcgcGCUCGGuGCGc -3'
miRNA:   3'- -CUgUUCGuCUGGGCGUU-----------CGAGUU-UGC- -5'
19104 3' -51.7 NC_004684.1 + 51112 0.7 0.737027
Target:  5'- cGACuGGCAGGCauggCCGCGAGCaUCugccGACGa -3'
miRNA:   3'- -CUGuUCGUCUG----GGCGUUCG-AGu---UUGC- -5'
19104 3' -51.7 NC_004684.1 + 18478 0.69 0.747708
Target:  5'- gGGCcuGCGGACCCGCAcguGCU-GAACu -3'
miRNA:   3'- -CUGuuCGUCUGGGCGUu--CGAgUUUGc -5'
19104 3' -51.7 NC_004684.1 + 2218 0.69 0.758267
Target:  5'- cGGCGGGaCGGACCCGCcagggaAGGCagAAAUGa -3'
miRNA:   3'- -CUGUUC-GUCUGGGCG------UUCGagUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 3860 0.69 0.768691
Target:  5'- -cCGAGCGccacGCCCGCGAGCUgcGACGc -3'
miRNA:   3'- cuGUUCGUc---UGGGCGUUCGAguUUGC- -5'
19104 3' -51.7 NC_004684.1 + 66443 0.69 0.789086
Target:  5'- uGACccGCAGGCCCGCgAAGCgauUCAGGuCGu -3'
miRNA:   3'- -CUGuuCGUCUGGGCG-UUCG---AGUUU-GC- -5'
19104 3' -51.7 NC_004684.1 + 16962 0.69 0.793086
Target:  5'- uGCAAGCGGGCCUGCAccugcuGCUgguguaccccaacagCAAGCa -3'
miRNA:   3'- cUGUUCGUCUGGGCGUu-----CGA---------------GUUUGc -5'
19104 3' -51.7 NC_004684.1 + 33890 0.68 0.808799
Target:  5'- uGCGGGCGGugCCGgUggGCgCGGACa -3'
miRNA:   3'- cUGUUCGUCugGGC-GuuCGaGUUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.