miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19104 3' -51.7 NC_004684.1 + 50431 0.66 0.901309
Target:  5'- aGCAGguGCAGGCCCGCcuugcAGGCcucgCGGAUGa -3'
miRNA:   3'- cUGUU--CGUCUGGGCG-----UUCGa---GUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 23943 0.67 0.854513
Target:  5'- aGCugcGCGGACCCGCcuGC-CGAGCc -3'
miRNA:   3'- cUGuu-CGUCUGGGCGuuCGaGUUUGc -5'
19104 3' -51.7 NC_004684.1 + 54900 0.67 0.862963
Target:  5'- cGGCAcgaGGCGGcCCUGguGGC-CGAGCGu -3'
miRNA:   3'- -CUGU---UCGUCuGGGCguUCGaGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 5983 0.67 0.879104
Target:  5'- -cCGAGCaAGuCCCGgccuGGCUCAGGCGc -3'
miRNA:   3'- cuGUUCG-UCuGGGCgu--UCGAGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 636 0.67 0.879104
Target:  5'- cGACGAGCAcggcGACCC-CAAGgaCAccGACGc -3'
miRNA:   3'- -CUGUUCGU----CUGGGcGUUCgaGU--UUGC- -5'
19104 3' -51.7 NC_004684.1 + 38338 0.67 0.879104
Target:  5'- gGACAAggcGguGACCaCGCccAAGCUC-AACGa -3'
miRNA:   3'- -CUGUU---CguCUGG-GCG--UUCGAGuUUGC- -5'
19104 3' -51.7 NC_004684.1 + 58064 0.66 0.886778
Target:  5'- cACGAGCuGACCgugCGCAccgugcAGCUCGAcCGg -3'
miRNA:   3'- cUGUUCGuCUGG---GCGU------UCGAGUUuGC- -5'
19104 3' -51.7 NC_004684.1 + 57189 0.66 0.894182
Target:  5'- nGCAGGCGGGCCUGgaAGGCggcggcgCGAugGu -3'
miRNA:   3'- cUGUUCGUCUGGGCg-UUCGa------GUUugC- -5'
19104 3' -51.7 NC_004684.1 + 26476 0.66 0.901309
Target:  5'- cGACA-GCGuGCCCGCcauGCUCAugccuGGCGa -3'
miRNA:   3'- -CUGUuCGUcUGGGCGuu-CGAGU-----UUGC- -5'
19104 3' -51.7 NC_004684.1 + 36390 0.67 0.845819
Target:  5'- -cCAGGCAcGCUCGCGGGCcuaccuccUCGAGCGc -3'
miRNA:   3'- cuGUUCGUcUGGGCGUUCG--------AGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 34659 0.68 0.836891
Target:  5'- gGGCAuuauccGGCAGGCCaaCGCGAGCaaccccCAGACGc -3'
miRNA:   3'- -CUGU------UCGUCUGG--GCGUUCGa-----GUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 19791 0.68 0.827738
Target:  5'- cGACAagauGGCGGGCCUGCuggccaagGAGUUCGucAGCGc -3'
miRNA:   3'- -CUGU----UCGUCUGGGCG--------UUCGAGU--UUGC- -5'
19104 3' -51.7 NC_004684.1 + 16067 0.76 0.385564
Target:  5'- aGCAAGCGuGGCCCGCcgguGAGC-CGAACGa -3'
miRNA:   3'- cUGUUCGU-CUGGGCG----UUCGaGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 57252 0.74 0.483776
Target:  5'- gGGCGGGCGGcaccgucgGCCCGCAcAGCUCGgccuguGACGg -3'
miRNA:   3'- -CUGUUCGUC--------UGGGCGU-UCGAGU------UUGC- -5'
19104 3' -51.7 NC_004684.1 + 5532 0.73 0.537181
Target:  5'- cGACGAGUGGuCCCGCcAGGCUguGACc -3'
miRNA:   3'- -CUGUUCGUCuGGGCG-UUCGAguUUGc -5'
19104 3' -51.7 NC_004684.1 + 4825 0.72 0.614901
Target:  5'- gGACAAGCucGGCCUG-AAGCUgGAGCGu -3'
miRNA:   3'- -CUGUUCGu-CUGGGCgUUCGAgUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 15571 0.7 0.726235
Target:  5'- cGAgAAGCuGACCCGCGAgaagggggcgcGCUCGGuGCGc -3'
miRNA:   3'- -CUgUUCGuCUGGGCGUU-----------CGAGUU-UGC- -5'
19104 3' -51.7 NC_004684.1 + 57162 0.7 0.726235
Target:  5'- cGGCGguGGCcGACgCGCAcGCUCGGGCGc -3'
miRNA:   3'- -CUGU--UCGuCUGgGCGUuCGAGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 51112 0.7 0.737027
Target:  5'- cGACuGGCAGGCauggCCGCGAGCaUCugccGACGa -3'
miRNA:   3'- -CUGuUCGUCUG----GGCGUUCG-AGu---UUGC- -5'
19104 3' -51.7 NC_004684.1 + 33890 0.68 0.808799
Target:  5'- uGCGGGCGGugCCGgUggGCgCGGACa -3'
miRNA:   3'- cUGUUCGUCugGGC-GuuCGaGUUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.