Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19105 | 3' | -56.1 | NC_004684.1 | + | 7271 | 1.09 | 0.001307 |
Target: 5'- gCGACCCGGUCACACCUUCGUUCCGGAg -3' miRNA: 3'- -GCUGGGCCAGUGUGGAAGCAAGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 38582 | 0.73 | 0.375489 |
Target: 5'- -cGCCCGGUCACACCgucgagcaccagcUCGgaaCCGGGu -3' miRNA: 3'- gcUGGGCCAGUGUGGa------------AGCaa-GGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 39323 | 0.73 | 0.387515 |
Target: 5'- gCGGCCCGGcCACACCg-----CCGGGg -3' miRNA: 3'- -GCUGGGCCaGUGUGGaagcaaGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 67232 | 0.72 | 0.431543 |
Target: 5'- -aACCCGGUCACcgguucgACCggCGUUuCCGGGc -3' miRNA: 3'- gcUGGGCCAGUG-------UGGaaGCAA-GGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 51092 | 0.72 | 0.445596 |
Target: 5'- gCGGCCCGGUCugauacgacagugaaGCGCCgcgUCGggcCCGGc -3' miRNA: 3'- -GCUGGGCCAG---------------UGUGGa--AGCaa-GGCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 4175 | 0.7 | 0.500184 |
Target: 5'- uGGCCCGGUUGCGCCcggCGggCgCGGu -3' miRNA: 3'- gCUGGGCCAGUGUGGaa-GCaaG-GCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 25373 | 0.7 | 0.510248 |
Target: 5'- gGACCCGGUCAgCGCCUaCGccgCCGc- -3' miRNA: 3'- gCUGGGCCAGU-GUGGAaGCaa-GGCcu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 24961 | 0.7 | 0.520396 |
Target: 5'- cCGACCCGGcCACGCUUcCGgugUCCcaGGGc -3' miRNA: 3'- -GCUGGGCCaGUGUGGAaGCa--AGG--CCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 65765 | 0.69 | 0.593266 |
Target: 5'- gGuACCCGGUUGCGCCggUGcaggugCCGGAa -3' miRNA: 3'- gC-UGGGCCAGUGUGGaaGCaa----GGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 16437 | 0.68 | 0.614472 |
Target: 5'- aCGugCUGGcgCACACCaUCGUgcgcCUGGAc -3' miRNA: 3'- -GCugGGCCa-GUGUGGaAGCAa---GGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 4224 | 0.68 | 0.635734 |
Target: 5'- uCGACCCGGcgCGCaACCUgg--UUCGGAg -3' miRNA: 3'- -GCUGGGCCa-GUG-UGGAagcaAGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 37950 | 0.68 | 0.646365 |
Target: 5'- uCGAaCCGGUCGC-CCagCGggUCCGGGc -3' miRNA: 3'- -GCUgGGCCAGUGuGGaaGCa-AGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 66098 | 0.68 | 0.656985 |
Target: 5'- cCGGCCaCGcGUCGCGCg--CGUaCCGGAa -3' miRNA: 3'- -GCUGG-GC-CAGUGUGgaaGCAaGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 25005 | 0.67 | 0.678149 |
Target: 5'- -aACCCGGUCGCGCUca-GcgCCGGu -3' miRNA: 3'- gcUGGGCCAGUGUGGaagCaaGGCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 60772 | 0.67 | 0.678149 |
Target: 5'- aCGGCCCuGGcCAgGCCg--GUUCCGGu -3' miRNA: 3'- -GCUGGG-CCaGUgUGGaagCAAGGCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 11608 | 0.67 | 0.692871 |
Target: 5'- -cACCCGGUCACGCCgccaucgaaggcucaUUCGUcgUCCu-- -3' miRNA: 3'- gcUGGGCCAGUGUGG---------------AAGCA--AGGccu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 59746 | 0.67 | 0.698105 |
Target: 5'- cCGACCCGGUCACcacgcccGCCacggCGagCUGGc -3' miRNA: 3'- -GCUGGGCCAGUG-------UGGaa--GCaaGGCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 53146 | 0.67 | 0.698105 |
Target: 5'- uGACCgGGUC-CACCggguccggCGUgaaggccUCCGGGg -3' miRNA: 3'- gCUGGgCCAGuGUGGaa------GCA-------AGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 63334 | 0.67 | 0.699149 |
Target: 5'- -cACCCGGUCAC-CCggCGauggCCGGu -3' miRNA: 3'- gcUGGGCCAGUGuGGaaGCaa--GGCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 39146 | 0.67 | 0.709564 |
Target: 5'- uGGCCgGGUC-CACCgcgcUGUgcUCCGGGu -3' miRNA: 3'- gCUGGgCCAGuGUGGaa--GCA--AGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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