Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19105 | 3' | -56.1 | NC_004684.1 | + | 383 | 0.66 | 0.779899 |
Target: 5'- gGugCCGGUCAggauCACCgcCGUggCGGGc -3' miRNA: 3'- gCugGGCCAGU----GUGGaaGCAagGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 2590 | 0.66 | 0.770199 |
Target: 5'- cCGACCCGaccgagUACGCCgacgcggaGUUCUGGAa -3' miRNA: 3'- -GCUGGGCca----GUGUGGaag-----CAAGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 2985 | 0.67 | 0.726075 |
Target: 5'- gGACggCGGgggCGCACCUUCGUcaccaugcugaugCCGGAc -3' miRNA: 3'- gCUGg-GCCa--GUGUGGAAGCAa------------GGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 4175 | 0.7 | 0.500184 |
Target: 5'- uGGCCCGGUUGCGCCcggCGggCgCGGu -3' miRNA: 3'- gCUGGGCCAGUGUGGaa-GCaaG-GCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 4224 | 0.68 | 0.635734 |
Target: 5'- uCGACCCGGcgCGCaACCUgg--UUCGGAg -3' miRNA: 3'- -GCUGGGCCa-GUG-UGGAagcaAGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 7271 | 1.09 | 0.001307 |
Target: 5'- gCGACCCGGUCACACCUUCGUUCCGGAg -3' miRNA: 3'- -GCUGGGCCAGUGUGGAAGCAAGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 7536 | 0.66 | 0.750409 |
Target: 5'- cCGACCUGG-C-CGCCguggcggCGUUCUGGu -3' miRNA: 3'- -GCUGGGCCaGuGUGGaa-----GCAAGGCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 11092 | 0.67 | 0.730169 |
Target: 5'- aCGuCCCGG-CGCGCCa--GggCCGGGc -3' miRNA: 3'- -GCuGGGCCaGUGUGGaagCaaGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 11466 | 0.66 | 0.770198 |
Target: 5'- uCGcCCCGGUC-CACCUUgGccaccagcUCCGGc -3' miRNA: 3'- -GCuGGGCCAGuGUGGAAgCa-------AGGCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 11608 | 0.67 | 0.692871 |
Target: 5'- -cACCCGGUCACGCCgccaucgaaggcucaUUCGUcgUCCu-- -3' miRNA: 3'- gcUGGGCCAGUGUGG---------------AAGCA--AGGccu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 16437 | 0.68 | 0.614472 |
Target: 5'- aCGugCUGGcgCACACCaUCGUgcgcCUGGAc -3' miRNA: 3'- -GCugGGCCa-GUGUGGaAGCAa---GGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 18417 | 0.66 | 0.760365 |
Target: 5'- gCGGCCCGGcgggCGCACCggCGg-CCGa- -3' miRNA: 3'- -GCUGGGCCa---GUGUGGaaGCaaGGCcu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 20714 | 0.66 | 0.74034 |
Target: 5'- cCGACCCGGUCAC-CCc-CGaaCCcgaGGAg -3' miRNA: 3'- -GCUGGGCCAGUGuGGaaGCaaGG---CCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 21186 | 0.66 | 0.760365 |
Target: 5'- gGACUCGGcCACACgUUa--UCCGGGc -3' miRNA: 3'- gCUGGGCCaGUGUGgAAgcaAGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 22836 | 0.67 | 0.730169 |
Target: 5'- uGACCCGaUCACcgGCCUgccgaccggguUCG-UCCGGGc -3' miRNA: 3'- gCUGGGCcAGUG--UGGA-----------AGCaAGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 23661 | 0.66 | 0.750409 |
Target: 5'- uGACCgGGUaCACcgacgGCCUggUCGgcCCGGAc -3' miRNA: 3'- gCUGGgCCA-GUG-----UGGA--AGCaaGGCCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 24961 | 0.7 | 0.520396 |
Target: 5'- cCGACCCGGcCACGCUUcCGgugUCCcaGGGc -3' miRNA: 3'- -GCUGGGCCaGUGUGGAaGCa--AGG--CCU- -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 25005 | 0.67 | 0.678149 |
Target: 5'- -aACCCGGUCGCGCUca-GcgCCGGu -3' miRNA: 3'- gcUGGGCCAGUGUGGaagCaaGGCCu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 25373 | 0.7 | 0.510248 |
Target: 5'- gGACCCGGUCAgCGCCUaCGccgCCGc- -3' miRNA: 3'- gCUGGGCCAGU-GUGGAaGCaa-GGCcu -5' |
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19105 | 3' | -56.1 | NC_004684.1 | + | 27368 | 0.66 | 0.779899 |
Target: 5'- uCGGCCCGGUCuGCGCCgcuaaCGcaggCUGGu -3' miRNA: 3'- -GCUGGGCCAG-UGUGGaa---GCaa--GGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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